Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0180
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   3.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.7  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   7.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.7  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   7.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 323 SLRPKLPRFDSSSGRHRLSTEDSFHLGL 406
           S+RPK P  D+ +G   LSTE    L L
Sbjct: 208 SVRPKFPSMDNING---LSTESKADLPL 232


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 569 HPGQDIPSGQRVHGTGPVQTQLGPSAVLGESHHLVAH 459
           HP  D+P  +RV   G +     P+A   +  H  A+
Sbjct: 70  HPVNDVPGVRRVLRNGTLVLLPFPAAAFRQDVHSAAY 106


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 569 HPGQDIPSGQRVHGTGPVQTQLGPSAVLGESHHLVAH 459
           HP  D+P  +RV   G +     P+A   +  H  A+
Sbjct: 70  HPVNDVPGVRRVLRNGTLVLLPFPAAAFRQDVHSAAY 106


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 174 KIYRGEKG*DPTAQGNARRSTYRLRGSKTVKILKKPEPTVGEGE 305
           K   GE+  + T  G   +S   L G+K +++ K  + T  E E
Sbjct: 64  KFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQKGEKQTTIERE 107


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 567 MLLPSPRTTWW 599
           ML PSP+T W+
Sbjct: 201 MLEPSPKTPWY 211


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 229 RRAFPWAVGSHPFSPR 182
           RR FP   G  PF+P+
Sbjct: 31  RRPFPTFPGQGPFNPK 46


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 210 AQGNARRSTYRLRGSKTVKILKKPEPTVGEGEVLIRVKACGLNFQDL 350
           A G+A  + YR+      ++      T+G G   I+     LN  DL
Sbjct: 122 ACGSAITTAYRIHADSCDRLWVLDTGTIGIGNTTIQACPYTLNIFDL 168


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 229 RRAFPWAVGSHPFSPR 182
           RR FP   G  PF+P+
Sbjct: 17  RRPFPTFPGQGPFNPK 32


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 442 MSPILRWATKWWLSPSTALGPSCVC 516
           MS I  +  K  L+P   + P+C C
Sbjct: 293 MSMIGAFGNKALLTPGVTMIPACTC 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,526
Number of Sequences: 438
Number of extensions: 3690
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)