Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0178
(677 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 121 1e-26
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ... 82 1e-14
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L... 82 1e-14
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet... 82 1e-14
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ... 78 2e-13
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 73 5e-12
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 70 5e-11
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 68 2e-10
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 59 8e-08
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 54 2e-06
UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:... 53 7e-06
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 52 1e-05
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 52 1e-05
UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo... 52 2e-05
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 50 5e-05
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 50 5e-05
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 49 9e-05
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 45 0.001
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 44 0.003
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 44 0.003
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 44 0.003
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 43 0.006
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 42 0.010
UniRef50_A7MN76 Cluster: Putative uncharacterized protein; n=1; ... 42 0.014
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 42 0.018
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 42 0.018
UniRef50_P06219 Cluster: Beta-galactosidase; n=11; Gammaproteoba... 42 0.018
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 41 0.024
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 41 0.032
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 41 0.032
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 41 0.032
UniRef50_A0ZLG1 Cluster: Beta-D-galactosidase; n=1; Nodularia sp... 40 0.042
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ... 40 0.056
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.39
UniRef50_A6FJQ2 Cluster: 50S ribosomal protein L5; n=8; Bacteria... 37 0.52
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 36 1.2
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 35 2.1
UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ... 33 6.4
UniRef50_A7RER7 Cluster: Predicted protein; n=1; Nematostella ve... 33 6.4
UniRef50_A7CZM5 Cluster: D-isomer specific 2-hydroxyacid dehydro... 33 8.4
UniRef50_A5B4R2 Cluster: Putative uncharacterized protein; n=1; ... 33 8.4
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 33 8.4
UniRef50_Q504V9 Cluster: ZNF341 protein; n=10; Euteleostomi|Rep:... 33 8.4
UniRef50_Q9BYN7 Cluster: Zinc finger protein 341; n=86; Eumetazo... 33 8.4
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 121 bits (292), Expect = 1e-26
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
+SIHHAR+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN +K
Sbjct: 121 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180
Query: 76 GQ 71
GQ
Sbjct: 181 GQ 182
Score = 109 bits (262), Expect = 6e-23
Identities = 52/58 (89%), Positives = 56/58 (96%)
Frame = -3
Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
L+EKDP+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLA
Sbjct: 63 LDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 120
>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
Erwinia amylovora|Rep: Putative uncharacterized protein
- Erwinia amylovora (Fire blight bacteria)
Length = 123
Score = 81.8 bits (193), Expect = 1e-14
Identities = 38/45 (84%), Positives = 39/45 (86%), Gaps = 2/45 (4%)
Frame = +1
Query: 508 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQV--AQPEWRMA 636
ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQ+ EWR A
Sbjct: 78 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRXLNGEWRFA 122
Score = 34.3 bits (75), Expect = 2.8
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 479 LAVVLQRRDWKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNKLRSLNGEWQ 637
LAVVLQRRDW+ + L L P + ++ +LR LNGEW+
Sbjct: 68 LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRXLNGEWR 120
>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
protein - Phage M13mp18
Length = 102
Score = 81.8 bits (193), Expect = 1e-14
Identities = 38/45 (84%), Positives = 39/45 (86%), Gaps = 2/45 (4%)
Frame = +1
Query: 508 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQV--AQPEWRMA 636
ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQ+ EWR A
Sbjct: 36 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRFA 80
Score = 36.3 bits (80), Expect = 0.69
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +2
Query: 479 LAVVLQRRDWKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNKLRSLNGEWQ 637
LAVVLQRRDW+ + L L P + ++ +LRSLNGEW+
Sbjct: 26 LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWR 78
>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
Beta-galactosidase - Escherichia coli (strain K12)
Length = 1024
Score = 81.8 bits (193), Expect = 1e-14
Identities = 38/45 (84%), Positives = 39/45 (86%), Gaps = 2/45 (4%)
Frame = +1
Query: 508 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQV--AQPEWRMA 636
ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQ+ EWR A
Sbjct: 18 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRFA 62
Score = 36.3 bits (80), Expect = 0.69
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +2
Query: 479 LAVVLQRRDWKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNKLRSLNGEWQ 637
LAVVLQRRDW+ + L L P + ++ +LRSLNGEW+
Sbjct: 8 LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWR 60
>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
organisms|Rep: LacZ-alpha peptide - Escherichia coli
Length = 90
Score = 78.2 bits (184), Expect = 2e-13
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1
Query: 508 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQV 612
ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQ+
Sbjct: 32 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQL 66
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 73.3 bits (172), Expect = 5e-12
Identities = 35/56 (62%), Positives = 44/56 (78%)
Frame = -3
Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 262
L+EK+P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G
Sbjct: 53 LDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNG 108
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 70.1 bits (164), Expect = 5e-11
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = -3
Query: 426 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
+ KDPKRL EG ALLRRL +G+L Q KL++VL LK E+ LERRLQT V++ G A
Sbjct: 63 DAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFA 119
Score = 56.8 bits (131), Expect = 5e-07
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR-PGRVKRKNLR 80
+SIHHAR+LIR + I+V KQVV++PSF+VR++S I + +P GR KRKN
Sbjct: 120 KSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKNNH 179
Query: 79 KGQ 71
G+
Sbjct: 180 AGK 182
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 68.1 bits (159), Expect = 2e-10
Identities = 34/62 (54%), Positives = 42/62 (67%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
+SI HA +L+ HIR+ KQVV+I F V LDS KH DF GGG PG VKRKN++K
Sbjct: 126 KSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRKHTDFFRHCLNGGGYPGSVKRKNVKK 185
Query: 76 GQ 71
G+
Sbjct: 186 GR 187
Score = 50.8 bits (116), Expect = 3e-05
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Frame = -3
Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMK------LDYVLGLKIEDFLERRLQTQVFK 268
L EKDP+ LFE N LLR+LV G+L E +MK + GL+I F E++LQTQVF+
Sbjct: 63 LNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQVFE 121
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 59.3 bits (137), Expect = 8e-08
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = -2
Query: 208 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 86
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 67
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 54.4 bits (125), Expect = 2e-06
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -2
Query: 184 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 80
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLK 58
>UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:
Beta-galactosidase - Yersinia pseudotuberculosis
Length = 1066
Score = 52.8 bits (121), Expect = 7e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +1
Query: 508 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQ 609
ENP +TQ +RL AHPPF SWR+ E A+ DRPS Q
Sbjct: 25 ENPQITQYHRLEAHPPFHSWRDVESAQKDRPSPQ 58
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 52.0 bits (119), Expect = 1e-05
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 128
++IH ARILI +HI+V+ Q+VN PSF+VR D+ I FSL S
Sbjct: 122 KTIHEARILIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/68 (38%), Positives = 44/68 (64%)
Frame = +2
Query: 68 TLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMM 247
T S + L ++ +++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S ++
Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVV 69
Query: 248 DGLARPAL 271
+ L + L
Sbjct: 70 NRLGQTQL 77
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = +1
Query: 259 QASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQSLGVLLLEG 432
Q L LQ++ QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQSL VL + G
Sbjct: 74 QTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSG 131
>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
Eukaryota|Rep: beta-galactosidase - Entamoeba
histolytica HM-1:IMSS
Length = 86
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/44 (61%), Positives = 33/44 (75%)
Frame = +2
Query: 509 KTLALPNLIALQHIPLSPAGVIAKRPAPIALPNKLRSLNGEWQI 640
KTLALPNLIALQHIPLSPAGVI++ +LRSL +W++
Sbjct: 16 KTLALPNLIALQHIPLSPAGVISEEARTDRPSQQLRSL--KWRM 57
Score = 37.5 bits (83), Expect = 0.30
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 574 SEEARTDRPSQQVAQPEWRMA 636
SEEARTDRPSQQ+ +WRMA
Sbjct: 38 SEEARTDRPSQQLRSLKWRMA 58
Score = 34.3 bits (75), Expect = 2.8
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 477 HWPSFYNVVTGKPWRYP 527
HWPSFYNVVTGK P
Sbjct: 5 HWPSFYNVVTGKTLALP 21
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 50.0 bits (114), Expect = 5e-05
Identities = 22/44 (50%), Positives = 34/44 (77%)
Frame = -3
Query: 387 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
L+++L R+G++++ LD +LGL E++LERRLQT V+K GLA
Sbjct: 73 LIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLA 116
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 50.0 bits (114), Expect = 5e-05
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = -3
Query: 396 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAS 253
G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA+
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLAN 113
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 49.2 bits (112), Expect = 9e-05
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = -3
Query: 354 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
D ++ KLDYVL L +E+FLERRLQT VFK+G+A
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMA 49
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 45.2 bits (102), Expect = 0.001
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 119
+S+HHAR+LI R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 125 KSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
Score = 41.1 bits (92), Expect = 0.024
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Frame = -3
Query: 396 GNALLRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLA 256
G +LLRRL++ G+L D++++ L+ VL L I +LERRLQ +VF AGLA
Sbjct: 70 GRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLA 124
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = -3
Query: 399 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
+ +L +L+R G++ + +D +L LK E+ LERRLQTQV + GLA
Sbjct: 78 QSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLA 124
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = -3
Query: 399 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
E L L + G+L + LD VL L +ED LERRLQT VF+ GLA
Sbjct: 70 EAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLA 117
Score = 33.5 bits (73), Expect = 4.8
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 241 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-GGRPGRVK 95
AR LI HI V +VV PS++V ++ I ++ SPF P R K
Sbjct: 123 ARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/56 (35%), Positives = 37/56 (66%)
Frame = -3
Query: 420 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAS 253
+D + + ++++L +G+L E KL+ VL LK++D +ERRLQT +++ G A+
Sbjct: 69 EDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFAN 123
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = -3
Query: 375 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAS 253
L R G+L ++ LD VL L +E LERRLQT VF+ GLA+
Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLAN 117
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 42.3 bits (95), Expect = 0.010
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = -3
Query: 399 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
E L +L ++GVL E +LD VL L ++D LERRLQT + + GLA
Sbjct: 68 EKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLA 114
>UniRef50_A7MN76 Cluster: Putative uncharacterized protein; n=1;
Enterobacter sakazakii ATCC BAA-894|Rep: Putative
uncharacterized protein - Enterobacter sakazakii ATCC
BAA-894
Length = 1043
Score = 41.9 bits (94), Expect = 0.014
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 508 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQV--AQPEWRMA 636
+NP +T +NRL +H P WR+++ AR PS V EW+ +
Sbjct: 28 QNPAITSVNRLPSHTPLHGWRDADRARRGEPSDAVLSLDGEWQFS 72
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 41.5 bits (93), Expect = 0.018
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -3
Query: 387 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
LL LVR G + KL+ VL L +ED L RRLQ+ VFK GL+
Sbjct: 73 LLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLS 115
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 41.5 bits (93), Expect = 0.018
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = -3
Query: 387 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA-SPSIMPEF 232
L+ L R G+L E +D VL LK+E L+RRLQTQV++ G A SP +F
Sbjct: 78 LIGSLQRSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQF 129
>UniRef50_P06219 Cluster: Beta-galactosidase; n=11;
Gammaproteobacteria|Rep: Beta-galactosidase - Klebsiella
pneumoniae
Length = 1034
Score = 41.5 bits (93), Expect = 0.018
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +1
Query: 511 NPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQVAQ 618
N +T LNRL AHP FASWR+ AR + PS + Q
Sbjct: 25 NQTITHLNRLPAHPVFASWRDELAARDNLPSSRRRQ 60
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 41.1 bits (92), Expect = 0.024
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -3
Query: 387 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
+++RL R +L +K LD VL L +E+ L+RRLQT VFK LA
Sbjct: 76 MIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLA 118
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 40.7 bits (91), Expect = 0.032
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = -2
Query: 223 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 80
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLK 182
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 40.7 bits (91), Expect = 0.032
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = -3
Query: 387 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
++ R+V+ G+L E L+ VL + FLERRLQT VFK GLA
Sbjct: 71 IIARMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLA 113
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 40.7 bits (91), Expect = 0.032
Identities = 17/41 (41%), Positives = 29/41 (70%)
Frame = -3
Query: 378 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
+L ++G +++ ++LD +L L + LERRLQT V++ GLA
Sbjct: 78 KLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLA 118
>UniRef50_A0ZLG1 Cluster: Beta-D-galactosidase; n=1; Nodularia
spumigena CCY 9414|Rep: Beta-D-galactosidase - Nodularia
spumigena CCY 9414
Length = 72
Score = 40.3 bits (90), Expect = 0.042
Identities = 18/25 (72%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
Frame = +1
Query: 565 WRNSEEARTDRPSQQV--AQPEWRM 633
WRNSEEARTDRPSQQ+ EWR+
Sbjct: 47 WRNSEEARTDRPSQQLRSLNGEWRL 71
>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 275
Score = 39.9 bits (89), Expect = 0.056
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +3
Query: 423 PRGGARYPIRPIVSRIT 473
PRGGARYPIRPIVSRIT
Sbjct: 259 PRGGARYPIRPIVSRIT 275
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 37.1 bits (82), Expect = 0.39
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -2
Query: 166 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR 80
+DS KH DFSL SP G R +VKRK L+
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLK 29
>UniRef50_A6FJQ2 Cluster: 50S ribosomal protein L5; n=8;
Bacteria|Rep: 50S ribosomal protein L5 - Moritella sp.
PE36
Length = 45
Score = 36.7 bits (81), Expect = 0.52
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Frame = -3
Query: 630 SPFRLR--NLLGRAIGAGLFAITPAGERG 550
+PF ++ LLGRAIGAGLFAITP E G
Sbjct: 10 APFAIQAAQLLGRAIGAGLFAITPEFELG 38
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 35.5 bits (78), Expect = 1.2
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = -3
Query: 387 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
L+ + R G+L +D VL LK+ LERRLQT V++ GLA
Sbjct: 78 LISHMQRAGLLGP-DADIDNVLALKVPAQLERRLQTLVYRKGLA 120
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +3
Query: 123 NGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA 242
+G+ KSMC S RT G FT CL TRI RIK A
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRA 97
>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
uncultured bacterium|Rep: Non-ribosomal peptide
synthetase - uncultured bacterium
Length = 338
Score = 33.1 bits (72), Expect = 6.4
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3
Query: 468 YDSL*GELGTGPPLE 424
YDSL GELGTGPPLE
Sbjct: 278 YDSLYGELGTGPPLE 292
>UniRef50_A7RER7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 430
Score = 33.1 bits (72), Expect = 6.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 659 QNINGLQFAIRHSGCATCWEGRSVRASSLLRQLAKGGCAARRLSWVT 519
Q INGLQ A + C C E RSV+ + +++ + ++L W T
Sbjct: 301 QAINGLQSADFSNACYVCGERRSVKKCAACKKVGYCSVSCQKLHWST 347
>UniRef50_A7CZM5 Cluster: D-isomer specific 2-hydroxyacid
dehydrogenase NAD-binding precursor; n=1; Opitutaceae
bacterium TAV2|Rep: D-isomer specific 2-hydroxyacid
dehydrogenase NAD-binding precursor - Opitutaceae
bacterium TAV2
Length = 437
Score = 32.7 bits (71), Expect = 8.4
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = -1
Query: 584 ASSLLRQLAKGGCAARRLSWVTPGFSSHDVV----KRRPVNCNTTHYRANWVPG-PPSRR 420
+S L +LAK G A RLS + +H + RP + H+R PG PP +R
Sbjct: 3 SSFLPSRLAKSGGGALRLSAASASIHTHAPARHHPRHRPRHRRALHHRRPCPPGQPPRQR 62
Query: 419 RTPR 408
R PR
Sbjct: 63 RHPR 66
>UniRef50_A5B4R2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 451
Score = 32.7 bits (71), Expect = 8.4
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = -3
Query: 426 EEKDP-KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIE---DFLERRLQTQVFKAGL 259
E + P +R + LR V + + +Q+KL VL L +E ++L R L+ Q KAG+
Sbjct: 313 ERETPIERAMQVTETLRVQVEVQKILHEQLKLQKVLQLNLEQNGEYLRRILEDQ-HKAGV 371
Query: 258 ASPSIMPEF*SGKGIFVSAS 199
A PS+M + + I +S+S
Sbjct: 372 ALPSLMGSHSNPQPIPLSSS 391
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 32.7 bits (71), Expect = 8.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 266 LAWRVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 165
L VHPSC + D + CP +CE P + C P
Sbjct: 134 LCGNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q504V9 Cluster: ZNF341 protein; n=10; Euteleostomi|Rep:
ZNF341 protein - Homo sapiens (Human)
Length = 795
Score = 32.7 bits (71), Expect = 8.4
Identities = 22/72 (30%), Positives = 26/72 (36%)
Frame = -1
Query: 617 CATCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSSHDVVKRRPVNCNTTHYRANWVP 438
CA C + S RA Q A G R + GFS H +K +
Sbjct: 626 CALCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKGFSRHKYLKDHRCRLGPQKDKDLQTR 685
Query: 437 GPPSRRRTPRDC 402
PP RR PR C
Sbjct: 686 RPPQRRAAPRSC 697
>UniRef50_Q9BYN7 Cluster: Zinc finger protein 341; n=86;
Eumetazoa|Rep: Zinc finger protein 341 - Homo sapiens
(Human)
Length = 854
Score = 32.7 bits (71), Expect = 8.4
Identities = 22/72 (30%), Positives = 26/72 (36%)
Frame = -1
Query: 617 CATCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSSHDVVKRRPVNCNTTHYRANWVP 438
CA C + S RA Q A G R + GFS H +K +
Sbjct: 685 CALCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKGFSRHKYLKDHRCRLGPQKDKDLQTR 744
Query: 437 GPPSRRRTPRDC 402
PP RR PR C
Sbjct: 745 RPPQRRAAPRSC 756
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,115,324
Number of Sequences: 1657284
Number of extensions: 16313836
Number of successful extensions: 48666
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 46582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48645
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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