Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0178
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.75 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.3  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   9.3  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   9.3  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 521 TPGFSSHDVVKR--RPVNCNTTHYRANWVPGPPSRRRTPRDCSK 396
           T G SS+++V+   +PV   T    +   P PPSR  T   C+K
Sbjct: 381 TLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRDLTTTLCTK 424


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 405 ISWGPSPRGGARYPIRPIVSRITIHWPSFYN 497
           IS  P+P        +P+ +   + +PS+YN
Sbjct: 336 ISAQPTPSQSPNQIYQPVTNLTNLTYPSYYN 366


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 435 PPLEEKDPKRLFEGNALLR 379
           P  EEK P+  F G  L R
Sbjct: 224 PTAEEKRPRTAFSGAQLAR 242


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 248 PSCQNFDPAKAYSCP 204
           P C+N + A  ++CP
Sbjct: 144 PECKNEEVAGGFTCP 158


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 248 PSCQNFDPAKAYSCP 204
           P C+N + A  ++CP
Sbjct: 144 PECKNEEVAGGFTCP 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,056
Number of Sequences: 336
Number of extensions: 3864
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)