Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0178
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   105   6e-24
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   105   8e-24
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   1.9  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.9  
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    27   2.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.6  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  105 bits (252), Expect = 6e-24
 Identities = 48/58 (82%), Positives = 55/58 (94%)
 Frame = -3

Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
           L+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLA
Sbjct: 62  LDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLA 119



 Score =  104 bits (250), Expect = 1e-23
 Identities = 46/62 (74%), Positives = 54/62 (87%)
 Frame = -2

Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
           +SIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR 
Sbjct: 120 KSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRS 179

Query: 76  GQ 71
            Q
Sbjct: 180 QQ 181


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  105 bits (251), Expect = 8e-24
 Identities = 48/58 (82%), Positives = 55/58 (94%)
 Frame = -3

Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
           L+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLA
Sbjct: 62  LDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLA 119



 Score =  103 bits (247), Expect = 2e-23
 Identities = 45/59 (76%), Positives = 53/59 (89%)
 Frame = -2

Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 80
           +SIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 120 KSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 342 MKLDYVLGLKIEDFLERRLQTQVFKAGLASPSIMPEF 232
           +++D  L + +E FL++   TQ+    L +P I+ EF
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPC-LIAPEILLEF 167


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 249 MDSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSP 425
           +D+P  + TPA   DA  SPQS    H    +V  PV    PD+ +    ++    PSP
Sbjct: 28  LDTPLAIHTPAKGFDADLSPQSLYDLH----TVTTPVTPLAPDEWDFSLDQSSGVIPSP 82


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 286
           L+  DP RL   N LL +L  +G+L  K    D      +     RRL
Sbjct: 64  LDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRL 111


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 494 VKRRPVNCNTTHYR--ANWVPGPPSRRRTPRDCSKVM 390
           +K+ P+ C   H +  + W   PP    +P+D SK++
Sbjct: 664 LKKTPI-CRWCHSKRSSEWFVAPPIEESSPKDKSKIV 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,027
Number of Sequences: 5004
Number of extensions: 61398
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)