Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0178
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 105 3e-23
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 105 3e-23
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 105 3e-23
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 73 2e-13
07_03_1357 - 25982861-25983068,25983354-25983361 61 7e-10
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 31 1.1
03_06_0038 + 31227349-31227621,31228120-31228212,31229439-312295... 28 6.0
06_01_0092 - 775290-775691 28 7.9
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 105 bits (252), Expect = 3e-23
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
+SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 122 KSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 181
Score = 81.0 bits (191), Expect = 8e-16
Identities = 38/58 (65%), Positives = 48/58 (82%)
Frame = -3
Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
L+EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+A
Sbjct: 64 LDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMA 121
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 105 bits (252), Expect = 3e-23
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
+SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 145 KSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 204
Score = 81.0 bits (191), Expect = 8e-16
Identities = 38/58 (65%), Positives = 48/58 (82%)
Frame = -3
Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
L+EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+A
Sbjct: 87 LDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMA 144
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 105 bits (252), Expect = 3e-23
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
+SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 338 KSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 397
Score = 81.0 bits (191), Expect = 8e-16
Identities = 38/58 (65%), Positives = 48/58 (82%)
Frame = -3
Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
L+EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+A
Sbjct: 280 LDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMA 337
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/56 (62%), Positives = 44/56 (78%)
Frame = -3
Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 262
L+EK+P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G
Sbjct: 53 LDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNG 108
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -2
Query: 211 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 86
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 44
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +3
Query: 246 WMDSPGQL*TPASADDAPRSPQSSDQ-AHNRVSSVFHP--VLQYEPDDVEGHYLRTISWG 416
W SP P+SA+ AP S ++D +HN S + P + QY+P + S
Sbjct: 148 WNSSP----MPSSANGAPASTTTADPGSHNGQSGIQMPPPLPQYQPGASLPSW--NSSPM 201
Query: 417 PSPRGGARYPIRPIVSRITIHWPSFYNVVTGKP 515
PS GA + P+ +WP FY +G P
Sbjct: 202 PSSANGAGLTMPPM------YWPGFYTPPSGFP 228
>03_06_0038 +
31227349-31227621,31228120-31228212,31229439-31229575,
31229953-31231030,31231757-31232374
Length = 732
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 349 KTDETRLCAWSED*GLLGASSADAGVQSWPGESIHHARI 233
KTD RL S+ +L S D +W SIHH ++
Sbjct: 117 KTDNQRLSPDSQQVSVLAESHCDLASGNWKEISIHHKKM 155
>06_01_0092 - 775290-775691
Length = 133
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 587 RASSLLRQLAKGGCAARR 534
RA+SLLRQL + GCAA +
Sbjct: 22 RAASLLRQLIEDGCAAAK 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,538,675
Number of Sequences: 37544
Number of extensions: 482489
Number of successful extensions: 1455
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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