Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0178
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   112   3e-25
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    32   0.43 
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       30   1.3  
AY724774-1|AAU21474.1|  750|Caenorhabditis elegans UNC-89-B prot...    30   1.3  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    30   1.3  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    30   1.3  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    30   1.3  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    30   1.3  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    30   1.3  
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    29   2.3  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   4.0  
U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    28   5.3  
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF003151-21|AAK18914.2|  259|Caenorhabditis elegans Hypothetical...    28   7.0  
Z49913-6|CAA90145.2|  460|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    27   9.3  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  112 bits (269), Expect = 3e-25
 Identities = 50/61 (81%), Positives = 58/61 (95%)
 Frame = -2

Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
           +SIHHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRK
Sbjct: 120 KSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRK 179

Query: 76  G 74
           G
Sbjct: 180 G 180



 Score =  109 bits (263), Expect = 1e-24
 Identities = 52/58 (89%), Positives = 56/58 (96%)
 Frame = -3

Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
           LE+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLA
Sbjct: 62  LEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLA 119


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 187 CSQLACGHEYAFAGSKFWHDGW-TRQASFEHLRLQTTLQEVLNL 315
           C +  CG E+ F   K WH+G  T   +FE L+ + T  E+ +L
Sbjct: 152 CQRPGCGREFCFKCRKVWHEGTRTCSKTFEQLK-KITENEINDL 194


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 378  DVEGHYLRTISWGPSPRGGARYP 446
            +V GHYL T+SW P+ R   RYP
Sbjct: 6286 EVTGHYL-TLSWIPTKRAPPRYP 6307


>AY724774-1|AAU21474.1|  750|Caenorhabditis elegans UNC-89-B
           protein.
          Length = 750

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 378 DVEGHYLRTISWGPSPRGGARYP 446
           +V GHYL T+SW P+ R   RYP
Sbjct: 365 EVTGHYL-TLSWIPTKRAPPRYP 386


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
            protein 89, isoform e protein.
          Length = 5992

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 378  DVEGHYLRTISWGPSPRGGARYP 446
            +V GHYL T+SW P+ R   RYP
Sbjct: 5646 EVTGHYL-TLSWIPTKRAPPRYP 5667


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 378  DVEGHYLRTISWGPSPRGGARYP 446
            +V GHYL T+SW P+ R   RYP
Sbjct: 6286 EVTGHYL-TLSWIPTKRAPPRYP 6307


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 378  DVEGHYLRTISWGPSPRGGARYP 446
            +V GHYL T+SW P+ R   RYP
Sbjct: 6286 EVTGHYL-TLSWIPTKRAPPRYP 6307


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 378  DVEGHYLRTISWGPSPRGGARYP 446
            +V GHYL T+SW P+ R   RYP
Sbjct: 5646 EVTGHYL-TLSWIPTKRAPPRYP 5667


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 378  DVEGHYLRTISWGPSPRGGARYP 446
            +V GHYL T+SW P+ R   RYP
Sbjct: 6286 EVTGHYL-TLSWIPTKRAPPRYP 6307


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
            protein R52.2 protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 384  EGHYLRTISWGPSPRGGARYPIRPIVSRITIHWPSFYNVVT 506
            E H      W P   G  RY + P   +I +H PS +NV++
Sbjct: 932  EDHDFCRFLWQPWNPGTQRYQLTPQSPKIILHEPSTWNVLS 972


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 184 GCSQLACGHEYAFAGSKFWH 243
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical
           protein F31E8.5 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 435 PPLEEKDPKRLFEGNALLRRL-VRIGVLDEKQMKLDYVLGLK 313
           PP++EKD K+  +  A L+ L ++ GVL  ++   + V GLK
Sbjct: 241 PPVKEKDAKKSIDLLAYLKTLDMKNGVLANREKTCESVGGLK 282


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 288 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 422
           +DA +  Q+S  A +  + ++H V + E    +GH+  + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 128
           ES+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 121 ESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


>AF003151-21|AAK18914.2|  259|Caenorhabditis elegans Hypothetical
           protein D1007.8 protein.
          Length = 259

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 542 QHIPLSPAGVIAKRPAPIALPNKLRSLN 625
           +H P+ PAG     P    L NK+ SLN
Sbjct: 134 KHTPILPAGASTNVPTRFGLKNKVGSLN 161


>Z49913-6|CAA90145.2|  460|Caenorhabditis elegans Hypothetical
           protein ZK938.6 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = -1

Query: 641 QFAIRHSGCATCWEGRSVR----ASSLLRQL--AKGGCAARRLSWVTPGFSSHDVVKRRP 480
           +F I  S  AT WEG  +     +  + +    AKGG A R   W        D+   + 
Sbjct: 325 KFNIIVSFHATYWEGAELPLRDDSDDIFKDQNSAKGGFAVR---WRELLQQKWDMSNIKF 381

Query: 479 VNCNTTHYRANWVPGPPSRRRTPRD 405
            N   T Y   W+PGPP+R  T  D
Sbjct: 382 HNLTKTSYM--WIPGPPTRFMTLED 404


>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
           protein 3 protein.
          Length = 1599

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 486 TASEL*YDSL*GELGTGPPLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIE 307
           TA  L  DSL GEL     ++E+  K    GNA++    ++G L +     D V    + 
Sbjct: 93  TAVRLTVDSLEGELTNKWVVKEEGSKERIYGNAVIHFNAKLGQLIKPVPTGDSVAATDVT 152

Query: 306 DFLE-RRLQTQV 274
           D  E     TQV
Sbjct: 153 DLQEFATFMTQV 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,325,888
Number of Sequences: 27780
Number of extensions: 372202
Number of successful extensions: 1097
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)