Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0178
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   4.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.2  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 444 GTGPPLEEKDPKRLFEGNALLR 379
           G G   EEK P+  F G  L R
Sbjct: 13  GNGGTPEEKRPRTAFSGEQLAR 34


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 509 SSHDVVKRRPVNCNTTHYRANWVPGP 432
           +S +  K++P +C+T  YR   V  P
Sbjct: 559 ASDECNKKQPSDCDTLEYRNGEVTTP 584



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 71  LSLAEVLPLDTSRTTSTEW 127
           LSL  V+ LDT++    EW
Sbjct: 10  LSLVSVVLLDTTQEEKLEW 28


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 295 LQEVLNLQTKHIIEFHLFFIQYSNTNQ 375
           ++ V N+  K  + F L F+Q  N N+
Sbjct: 42  IRPVQNMTEKVHVNFGLAFVQLINVNE 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,073
Number of Sequences: 438
Number of extensions: 4537
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)