Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0178
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   107   9e-24
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   106   2e-23
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   1.2  
At4g16140.1 68417.m02445 proline-rich family protein contains pr...    29   3.7  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   4.9  
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ...    28   4.9  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    27   8.6  
At3g58270.1 68416.m06496 meprin and TRAF homology domain-contain...    27   8.6  
At3g27530.1 68416.m03441 vesicle tethering family protein contai...    27   8.6  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  107 bits (256), Expect = 9e-24
 Identities = 48/66 (72%), Positives = 58/66 (87%)
 Frame = -2

Query: 271 QSWPGESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKR 92
           +S   +SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR
Sbjct: 117 KSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKR 176

Query: 91  KNLRKG 74
           +N R G
Sbjct: 177 RNERAG 182



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 40/58 (68%), Positives = 50/58 (86%)
 Frame = -3

Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
           L+EK+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+A
Sbjct: 64  LDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMA 121


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  106 bits (254), Expect = 2e-23
 Identities = 48/62 (77%), Positives = 56/62 (90%)
 Frame = -2

Query: 271 QSWPGESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKR 92
           +S   +SIHH+R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR
Sbjct: 117 KSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKR 176

Query: 91  KN 86
           +N
Sbjct: 177 RN 178



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 40/58 (68%), Positives = 49/58 (84%)
 Frame = -3

Query: 429 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
           L+EK P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+A
Sbjct: 64  LDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMA 121


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +2

Query: 113 TSTEWRFQREVNVLARVQAHN 175
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At4g16140.1 68417.m02445 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 164

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
 Frame = +3

Query: 276 PASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTIS------WGPSPRGGA 437
           P++    P SP ++       SS   P   Y P    G Y    S      + P P+ G 
Sbjct: 51  PSNPSPPPPSPTTTACPPPPSSSGGGPYYYYPPASQSGSYRPPPSSSSGGYYYPPPKSGG 110

Query: 438 RYPIRPIVSRITIHWPSFY 494
            YP  P  + I  ++P +Y
Sbjct: 111 NYPYTPPPNPIVPYFPFYY 129


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 346 TDETRLCAWSED*GLLGASSADAGVQSW 263
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 452

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 281 RRCSKLAWRVHPSCQNFDPAKAYSCPQASCEH 186
           RR   L W++          K Y CP+ SC H
Sbjct: 82  RRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVH 113


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 378 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 277
           RL  + VLDE++  +D  LG+K     ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506


>At3g58270.1 68416.m06496 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 343

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 217 AFAGSKFWHDGWTRQASFEHLRLQTTLQEVLN 312
           A AGS+F  DGW R A F H  +   L + L+
Sbjct: 55  AVAGSEFLPDGWRRHAYF-HFSVVNQLSDELS 85


>At3g27530.1 68416.m03441 vesicle tethering family protein contains
           Pfam PF04869: Uso1 / p115 like vesicle tethering
           protein, head region and PF04871: Uso1 / p115 like
           vesicle tethering protein, C terminal region
          Length = 914

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 603 GRAIGAGLFAITPAGERGMCCKAIKLGNARVFQSRRCKTTASEL*YDSL*GELGTGPPLE 424
           G  +  GL +    G+   CC+A  + +  V  + RCK  A ++  +S    +GT  PL 
Sbjct: 436 GSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPLF 495

Query: 423 EK 418
           ++
Sbjct: 496 QR 497


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,596,188
Number of Sequences: 28952
Number of extensions: 350652
Number of successful extensions: 1033
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)