Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0177
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0148 + 1730930-1731131,1731387-1731826 30 1.4
08_02_1611 - 28224239-28224511 30 1.9
08_02_0943 + 22849939-22850211 30 1.9
04_01_0495 - 6515982-6516254 30 1.9
02_04_0254 - 21314861-21315805 30 1.9
02_04_0252 - 21305834-21306778 30 1.9
02_04_0250 - 21287782-21288726 30 1.9
02_04_0248 - 21278756-21279700 30 1.9
02_04_0246 - 21269730-21270674 30 1.9
09_04_0506 - 18188785-18190599 29 3.3
11_06_0313 + 22306497-22308938 29 4.3
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 4.3
10_01_0130 + 1540412-1541173 28 5.7
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 28 5.7
02_05_0676 + 30807324-30807602 28 7.5
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 27 9.9
12_02_0939 + 24581356-24581628 27 9.9
03_03_0138 + 14766592-14766754,14768052-14768476 27 9.9
02_05_0192 + 26602247-26602617,26602701-26603016 27 9.9
>10_01_0148 + 1730930-1731131,1731387-1731826
Length = 213
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -1
Query: 614 QDRGRRSRPKERSGRDGIGSETGRPPSCWRRGRERS 507
QDRGRR R K G G + T PP WRR + S
Sbjct: 13 QDRGRRRRRKVLDGVSGCPAATRLPP--WRRRQHGS 46
>08_02_1611 - 28224239-28224511
Length = 90
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -1
Query: 593 RPKERSGRDGIGSETGRPPSCWRRGRERSGMSE 495
R ERS R G GR WRRGR R G E
Sbjct: 29 RAAERSRRRWGGRRRGRRQRWWRRGRGRGGGEE 61
>08_02_0943 + 22849939-22850211
Length = 90
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -1
Query: 593 RPKERSGRDGIGSETGRPPSCWRRGRERSGMSE 495
R ERS R G GR WRRGR R G E
Sbjct: 29 RAAERSRRRWGGRRRGRRQRWWRRGRGRGGGEE 61
>04_01_0495 - 6515982-6516254
Length = 90
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -1
Query: 593 RPKERSGRDGIGSETGRPPSCWRRGRERSGMSE 495
R ERS R G GR WRRGR R G E
Sbjct: 29 RAAERSRRRWGGRRRGRRQRWWRRGRGRGGGEE 61
>02_04_0254 - 21314861-21315805
Length = 314
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 647 KRVRG*VREHTQDRGRRSRPKERSGRDGIGSETG 546
+R R T RGRR RP+ RSG G G G
Sbjct: 53 ERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGG 86
>02_04_0252 - 21305834-21306778
Length = 314
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 647 KRVRG*VREHTQDRGRRSRPKERSGRDGIGSETG 546
+R R T RGRR RP+ RSG G G G
Sbjct: 53 ERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGG 86
>02_04_0250 - 21287782-21288726
Length = 314
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 647 KRVRG*VREHTQDRGRRSRPKERSGRDGIGSETG 546
+R R T RGRR RP+ RSG G G G
Sbjct: 53 ERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGG 86
>02_04_0248 - 21278756-21279700
Length = 314
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 647 KRVRG*VREHTQDRGRRSRPKERSGRDGIGSETG 546
+R R T RGRR RP+ RSG G G G
Sbjct: 53 ERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGG 86
>02_04_0246 - 21269730-21270674
Length = 314
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 647 KRVRG*VREHTQDRGRRSRPKERSGRDGIGSETG 546
+R R T RGRR RP+ RSG G G G
Sbjct: 53 ERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGG 86
>09_04_0506 - 18188785-18190599
Length = 604
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 85 GHYSHGLVAHGVVAHGLAPAAPTISPGDLHGATIDAHVEA 204
G+Y G + G G P T+ G+LH T DA +EA
Sbjct: 164 GNYGGGPIVVGNGGGGDGPGGTTLFVGELHWWTTDADLEA 203
>11_06_0313 + 22306497-22308938
Length = 813
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 511 RSRPRRQQDGGLPVSDPIPSRPDRSFGRLRRPRS 612
R RP+R QD +P + +PS P + ++ P S
Sbjct: 126 RGRPKRVQDSSVPSAHLVPSAPGGNITAVQTPPS 159
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 620 HTQDRGRRSRPKERSGRDGIGSETGRPP 537
HT D GR + G+ SE+GRPP
Sbjct: 2052 HTYDAGRHKSGPKSIGKHKASSESGRPP 2079
>10_01_0130 + 1540412-1541173
Length = 253
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 626 REHTQDRGRRSRPKERSGRDGIGSETGRPPSCWRRGRER 510
R+H+Q R R +E DG +E R S +RRGR R
Sbjct: 171 RQHSQRRATRDYGEEHVRHDGCCTENYR--STYRRGRRR 207
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 514 SRPRRQQDGGLPVSDPIPSRPDRSFGRLRRPRSWV 618
S PR G P DP P+R G L R W+
Sbjct: 757 SSPRAAPQSGKPNQDPNQDAPNRRLGLLSRGLGWL 791
>02_05_0676 + 30807324-30807602
Length = 92
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 517 RPRRQQDGGLPVSDPIPSRPDRSFGRLRR 603
RPRR+Q G PV + P R + RR
Sbjct: 22 RPRRRQQRGAPVEEAAPQRAEDGVEEARR 50
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -1
Query: 629 VREHTQDRGRRSR---PKERSGRDGIGSETGRPPSCWRRGRERSGMSEHW 489
+R D GRR R +R G DG G G WR GR+ G+ W
Sbjct: 18 LRSAVADGGRRLRRGLSGQRPGHDGGGGLRG-----WRPGRDGGGLRGRW 62
>12_02_0939 + 24581356-24581628
Length = 90
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -1
Query: 593 RPKERSGRDGIGSETGRPPSCWRRGRERSGMSE 495
R ERS R G GR WRRGR R E
Sbjct: 29 RAAERSRRRWGGRRRGRRQRWWRRGRGRGSGEE 61
>03_03_0138 + 14766592-14766754,14768052-14768476
Length = 195
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 605 GRRSRPKERSGRDG---IGSETGRPPSCWRRGRERSG 504
G RSR +E G +G I E R S W RGR G
Sbjct: 148 GYRSRSREGGGTEGRRVIDREVRRRRSTWARGRGTEG 184
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/64 (25%), Positives = 24/64 (37%)
Frame = -1
Query: 593 RPKERSGRDGIGSETGRPPSCWRRGRERSGMSEHWSTISYWXXXXXXXXXXSDAIGSVGD 414
RP+ S G G +CWR+ R S ++ W ++A+ VG
Sbjct: 44 RPRRLSAGSGCGRWWSAGDACWRQRRRCGRGSWRRRLLAAWWWRATAQRRFAEAVVRVGG 103
Query: 413 HGGG 402
G G
Sbjct: 104 SGDG 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,618
Number of Sequences: 37544
Number of extensions: 183822
Number of successful extensions: 1026
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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