Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0177
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      31   1.1  
SB_46460| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_4638| Best HMM Match : DUF1283 (HMM E-Value=0.46)                   29   2.5  
SB_472| Best HMM Match : Cas1p (HMM E-Value=0)                         28   7.7  
SB_5953| Best HMM Match : FeS (HMM E-Value=5.5)                        28   7.7  

>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = +1

Query: 505  PLRSRPRRQQDGGLPVSDPIPSRPDRSFGRLRRPRSWVCSRTHPRTRLT 651
            P    P   Q GGLP   P P    +       PR    S  HP+  LT
Sbjct: 2156 PQAPPPMSPQQGGLPSQSPRPVMSPQPHANTLSPRQQTMSPAHPQQSLT 2204


>SB_46460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 464 RCPSSLWCSSARTCRYAPALAASKTVVSQSLTQSH 568
           RCPSS+ C S+  CR   ++A  ++V  +     H
Sbjct: 29  RCPSSIHCPSSNHCRRCRSIARRRSVARRRSIACH 63


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 499  DMPLRS-RPRRQQDGGLPVSDPIPSRPDRSFGRLRRPRSWVCSRTHPR 639
            D+P+R   P        PV  P+P +PD S  +  +P+ W   RT P+
Sbjct: 1944 DIPVRDIHPTVNNKPYSPVKPPLPVKPDVSSTKRSQPKDWFI-RTAPK 1990


>SB_4638| Best HMM Match : DUF1283 (HMM E-Value=0.46)
          Length = 986

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 461  IRCPSSLWC--SSARTCRYAPALAASKTVVSQSLTQSHP 571
            IR  +  WC  +S +TCR +P L +++ V    LTQ  P
Sbjct: 928  IRLAAMRWCRKNSTKTCRNSPFLKSAQAVKRFRLTQVSP 966


>SB_472| Best HMM Match : Cas1p (HMM E-Value=0)
          Length = 932

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +1

Query: 127 HGLAPAAPTISPGDLHGATIDAHVEASDHV-RXXXXXXREYHDQ 255
           HGLAP  P   P   H  T   H+  ++ + R         HDQ
Sbjct: 496 HGLAPRMPASDPYGYHNDTGTCHIHTAERLARRNPRNTETNHDQ 539


>SB_5953| Best HMM Match : FeS (HMM E-Value=5.5)
          Length = 424

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 517 RPRRQQDGGLPVSDPIPSRPDRS 585
           R R+QQ  GL  + PIPS  DR+
Sbjct: 195 RSRQQQPAGLATTPPIPSPTDRA 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,731,214
Number of Sequences: 59808
Number of extensions: 170116
Number of successful extensions: 756
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)