Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0177
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   2.2  
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    28   5.1  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    28   5.1  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 623 EHTQDRGRRSRPKERSGRDGIGSETGRPPSCWRRGRE--RSGMSEHWST 483
           E + D   R +  ERSG     S + R PS  RRG    RSG S   S+
Sbjct: 143 ESSDDENDRKKKGERSGSSSSSSGSSRSPSRGRRGGRGGRSGSSSSSSS 191


>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +2

Query: 485  CSSARTCRYAPALAASKTVVSQSLTQSHPAQIAPLV 592
            CSS +T RYAP LAAS    S  + +    QIA L+
Sbjct: 1069 CSSYKTDRYAPMLAASLCDPSVIVRRHAINQIARLI 1104


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +2

Query: 485  CSSARTCRYAPALAASKTVVSQSLTQSHPAQIAPLV 592
            CSS +T RYAP LAAS    S  + +    QIA L+
Sbjct: 1069 CSSYKTDRYAPMLAASLCDPSVIVRRHAINQIARLI 1104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,158,794
Number of Sequences: 27780
Number of extensions: 109356
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)