Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0177
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   4.5  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   7.8  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.8  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 653 SVKRVRG*VREHTQDRGRRSRPKER 579
           S ++ R   +E ++DR  R R KER
Sbjct: 288 SYRKYRETSKERSRDRTERERSKER 312


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 544 LPVSDPIPSRPDRSF 588
           +P  + +PS PDR F
Sbjct: 65  VPFEETLPSLPDRKF 79


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 544 LPVSDPIPSRPDRSF 588
           +P  + +PS PDR F
Sbjct: 67  VPFEETLPSLPDRKF 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,819
Number of Sequences: 438
Number of extensions: 1820
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)