Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0176
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 29 0.42
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac... 28 1.3
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 27 1.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.2
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 27 2.2
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 27 3.0
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 5.2
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 25 9.0
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 9.0
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 29.5 bits (63), Expect = 0.42
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Frame = +2
Query: 233 ISIKQNDEIEQDTFEMQVRAANIV-RAGES---LMKLVSDIKQYL-ILNDFPSVNEAITQ 397
+SI +IEQD F + + V RA ++ L+ + I Y +L +N + +
Sbjct: 3274 LSINLRRKIEQDYFSNPIFTFDSVNRASKACGPLLLWIKSICNYSKVLEKLEPLNSEVDR 3333
Query: 398 NSKLFRTKQQECDQKLMSLRDDIAADLYDLEDEYFTSFISK 520
KL + +EC Q+ ++ D+ L L++EY S IS+
Sbjct: 3334 -LKLEQKNAEECIQETIAACKDLDEKLLQLQEEY-ASMISE 3372
>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 136
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +2
Query: 242 KQNDEIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYLILN----DFPSVNEAITQNSKL 409
K + + ++++ ++VRA E L+ + IK Y + N FP+V+ + K+
Sbjct: 44 KDKYTVAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYWLTNSLSTSFPTVDYSEPDLEKV 103
Query: 410 FRT 418
RT
Sbjct: 104 KRT 106
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -1
Query: 280 HFKCVLFYFVILFN*DSFSTFANFIISS-KFSNMLLTSSFNLVVY 149
HF +++YF+I F+ +FS I+SS S++L T++F V +
Sbjct: 7 HFTFIVYYFIISFS-YAFSIKQEIIVSSHNASSILNTTAFWFVEF 50
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 317 SLMKLVSDIKQYL-ILNDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAADLYDLED 493
SL KL+ DI L DFPS++ T E D L + D + + YD E+
Sbjct: 354 SLWKLILDIAPDAGDLFDFPSLSSISKDLCVPIETPVSEIDISLTAYNDPVISPYYDTEE 413
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 144 KSYTTRLKEDVKSMLENFEEIIKLAKVENE 233
K+YT + KED +L E I K ++ NE
Sbjct: 98 KAYTAKTKEDFAYLLSQLETIFKENEILNE 127
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 293 ANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNSKL--FRTKQQECDQKLMSLRDDI 466
A +V+ + +MK + +I+ I + S + + NSKL F QQ +++L D+
Sbjct: 896 AMLVKLSKKIMKCIDEIETKDIEEELGSNKKTESSNSKLPEFTPLQQSLEEELQEGADEA 955
Query: 467 AADLYDLEDE 496
L + + E
Sbjct: 956 MLALREKQRE 965
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 66 KSYASLSNKEQT-NMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQL 242
+S+A + +Q+ MQR L Q + +LK EDV L+N EE+ + + S L
Sbjct: 358 QSFADDDDLQQSIAMQRRLAQKRAKILKP------EDVAEQLQNAEEVTDMTDSDTASGL 411
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 429 SCCFVRNNFEFWVMASLTDGKSLRIKYCLISDTSFISDS 313
SC ++ + + S+ DGK L I CL++ +S D+
Sbjct: 299 SCRQIKRSSVVSLCNSVFDGKKLTIAKCLLTSSSIKDDT 337
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 90 KEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTK*NKT 269
+ Q +Q N E S K +++S E+F IK ENE +++R+ + +
Sbjct: 273 QHQAELQ-DFASNIEQKANSLIMEYKNELQSAEEHFSHKIKELTSENELKISRLQEEKDS 331
Query: 270 HLK 278
LK
Sbjct: 332 LLK 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,134
Number of Sequences: 5004
Number of extensions: 38718
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -