Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0176
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16902| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   5e-22
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     35   0.047
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        31   1.0  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 30   1.8  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_45733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          29   4.1  
SB_867| Best HMM Match : Leo1 (HMM E-Value=0)                          29   4.1  
SB_55764| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   5.3  
SB_33418| Best HMM Match : IQ (HMM E-Value=1.6)                        28   5.4  
SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)                27   9.5  
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)                27   9.5  

>SB_16902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  101 bits (242), Expect = 5e-22
 Identities = 47/82 (57%), Positives = 64/82 (78%)
 Frame = +2

Query: 263 QDTFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQQECDQK 442
           QD +E+ VRAANIVRAGESLMKLVSDIK++LILNDFPSVNE+I + ++  +  Q   D +
Sbjct: 49  QDQYEVNVRAANIVRAGESLMKLVSDIKEFLILNDFPSVNESIAERTRRLQAIQNHTDSQ 108

Query: 443 LMSLRDDIAADLYDLEDEYFTS 508
           L +L++D+A  LY LE+  ++S
Sbjct: 109 LTALKEDMATTLYGLEEALYSS 130


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 23/78 (29%), Positives = 42/78 (53%)
 Frame = +3

Query: 24  LDCRKYNKK*YE*IKSYASLSNKEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEE 203
           L+ RK  ++    +K   S + +E+ N+     +  E LL++  T++ ED+  +L   EE
Sbjct: 456 LEVRKKLEEKVAELKEQLSNNQREKDNLTYE-KEELERLLEAEGTKM-EDLSQLLSKMEE 513

Query: 204 IIKLAKVENESQLNRMTK 257
             K  K+ENE+  + +TK
Sbjct: 514 EFKKNKIENEALKDELTK 531



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 425  QECDQKLMSLRDDIAADLYDLEDEY 499
            QE +QK+  LR++ +ADL +LE  +
Sbjct: 1051 QELEQKMQDLRENFSADLSELEQNF 1075


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +3

Query: 54   YE*IKSYASLSNKEQTNMQRSLPQNKEALLKSYTTRLKED---VKSMLENFEEIIKLAKV 224
            YE + S  S  NKE  N    L Q K  LL+  TT+ K+D   VK M E  +E+ + +K 
Sbjct: 1247 YEELVSERS-KNKELMNQNNQLSQ-KVKLLEGVTTKQKKDIERVKQMEEKLKELERQSKQ 1304

Query: 225  ENES 236
              E+
Sbjct: 1305 SEET 1308


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 81   LSNKEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAK 221
            L+  EQT  Q  LP+  +  LKS      E+ K++LEN E ++   K
Sbjct: 4337 LTELEQTVPQEPLPEEVKGGLKSLIEDRLENAKTLLENTEIVLCFLK 4383


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 63   IKSY--ASLSNKEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENES 236
            IK+Y   SLS+K   N  R L +NK  LLKS  T+ K   K  L       K +K  ++S
Sbjct: 4376 IKAYRSVSLSHKTGGNGDRILKENKGELLKSEPTQKKHLHKVRLN------KHSKRLSKS 4429

Query: 237  QLNRMTK*NKTH 272
            QLN +    K H
Sbjct: 4430 QLNVLFHLMKPH 4441


>SB_45733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/44 (29%), Positives = 29/44 (65%)
 Frame = +3

Query: 102 NMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENE 233
           N Q+ L + ++  ++    RLKED++ + +++E++ K A+V N+
Sbjct: 176 NQQQLLSRREQIHVR--LERLKEDLEDLQDSYEQVTKNARVMND 217


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 320 LMKLVSDIKQYLILNDFPSVNEAI--TQNSKLFRTKQQECDQKLMSLRDDIAADLYD 484
           L KL  D+K+  +++ FPS N+ +   Q  K+ + + +    +L     +  AD+YD
Sbjct: 310 LNKLSKDVKKGHLMSAFPSCNDEVYTFQERKIIKDRVKHEKTELSEKVSEQGADVYD 366


>SB_867| Best HMM Match : Leo1 (HMM E-Value=0)
          Length = 591

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 25/67 (37%), Positives = 35/67 (52%)
 Frame = +2

Query: 296 NIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAAD 475
           N  R G SL  ++SD+K++  L+   SV+E    NS     K +    + MSL D   +D
Sbjct: 123 NKKRVG-SLQNVISDLKRFKELDQ--SVSEDQGSNSG----KGKPTHLEKMSLEDVFGSD 175

Query: 476 LYDLEDE 496
           L D EDE
Sbjct: 176 LDDSEDE 182


>SB_55764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 24.2 bits (50), Expect(2) = 5.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 456 RKDINFWSHSCCFVR 412
           R  I+ W H+CC++R
Sbjct: 114 RVAISRWLHACCYIR 128



 Score = 22.6 bits (46), Expect(2) = 5.3
 Identities = 4/12 (33%), Positives = 9/12 (75%)
 Frame = -2

Query: 438 WSHSCCFVRNNF 403
           W H+CC+++  +
Sbjct: 167 WLHACCYIQGGY 178


>SB_33418| Best HMM Match : IQ (HMM E-Value=1.6)
          Length = 344

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +3

Query: 90  KEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTK*NKT 269
           + + N++R        + K     L E++KS+ +NFE++I   + +NE  +  +   +  
Sbjct: 273 RHEVNLERQQTMQGWTIEKLNELTL-EEIKSLRKNFEQLI---QAQNEMLVRELMMRDAL 328

Query: 270 HLKCKSGLL 296
           HLK  S LL
Sbjct: 329 HLKQDSMLL 337


>SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 359 LNDFPSVNEAITQNSKLFRTKQQECDQ--KLMSLRDDIAADLYDLEDEYFTSFISKC 523
           L+DF S N +I  +S LF  K  EC    K +S   D +  L+ ++     S ++KC
Sbjct: 378 LSDFASPNNSIDTSSPLFSGKSAECSDVTKCVSNVSDASDCLFTVQSAE-CSDVTKC 433


>SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 393 VMASLTDGKSLRIKYCLISDTSFISDSPALTILAALTCISNVSCSISS 250
           + AS T   SL +    +     IS SPA T+LA  + I N  C  S+
Sbjct: 132 ISASTTQSASLGLNASGVVYPESISASPAATVLAVSSYICNPDCHEST 179


>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
          Length = 243

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 365 DFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAADLYDLED 493
           D+P+V  +I   +K++       D   MSL DD  A   DLED
Sbjct: 63  DYPNVAPSINCKTKIYHPNMDGYDGVCMSLLDDWQAS-NDLED 104


>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 242 KQNDEIEQDTFEMQVRAANIVRAGESLMKLVSDIK--QYLILNDFPSVNEAITQNSKLFR 415
           +QN EIE+   E +V  A++ +  E+LMK   +++  Q  +L    +  +   +  ++  
Sbjct: 162 QQNKEIERILSENKVTLADLSKTQENLMKKAKELEDLQQKLLKQEDTAKQDKRRLQEVIL 221

Query: 416 TKQQE 430
           TK++E
Sbjct: 222 TKEKE 226


>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
          Length = 1060

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 380 NEAITQNSKLFRTKQQECDQKLMSLRDDIAADLYDLEDEYFTSFIS 517
           ++ +TQ  K +R  +Q C     + R  +++ L  L+D+   S  S
Sbjct: 570 SQDVTQQKKAYRVLEQMCSSDSQACRAFLSSHLDQLQDKLLNSLAS 615


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,901
Number of Sequences: 59808
Number of extensions: 242088
Number of successful extensions: 699
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)