Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0176
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49073-2|CAA88887.1|  157|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    28   4.8  
AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    28   4.8  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    28   4.8  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    28   4.8  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    28   4.8  
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical ...    28   6.3  
U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U39852-8|AAK39261.2|  113|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical...    27   8.4  
AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical...    27   8.4  

>Z49073-2|CAA88887.1|  157|Caenorhabditis elegans Hypothetical
           protein ZK970.3 protein.
          Length = 157

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
 Frame = +2

Query: 275 EMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQ-NSKLFRTKQQECDQKLMS 451
           EM VRA  +VRA + L+KL +D+K++LIL+DF  +   I Q  ++   T +Q+  Q    
Sbjct: 74  EMAVRAQLMVRASDELLKLTADLKEFLILHDFHFLTHNIKQAEAQCEETLRQQSHQH-NC 132

Query: 452 LRDDIAADLYDLEDEYFTSF 511
           L  +++  L+DLE E   +F
Sbjct: 133 LDSEVSNILFDLEREIAENF 152



 Score = 30.7 bits (66), Expect = 0.90
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +3

Query: 129 KEALLKSYTTRLKEDVKSMLENFEEIIKLAKV 224
           K+ ++  +  RL++++KS+ +NF  II+ AKV
Sbjct: 20  KKLIIDEFKRRLRDNIKSLNDNFFHIIQAAKV 51


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 93  EQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKL-AKVENESQL 242
           E+T  +RS+   + +       RL+++++ M E+ EE+  L  K+EN  +L
Sbjct: 73  EETMQERSIVLEENSRQNEERDRLQKEIEKMKEDSEEVAALKQKLENTRRL 123


>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 93  EQTNMQRSLPQNKEALLKSYTTR--LKEDVKSMLENFEEIIKLAKVENESQLNRMTK*NK 266
           E+  ++R   QN+         R   KE++K  LE   E ++ AK +NE Q N +    +
Sbjct: 262 EKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAYE 321

Query: 267 THLKCKSG 290
           T++    G
Sbjct: 322 TNIFAVQG 329


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 93  EQTNMQRSLPQNKEALLKSYTTR--LKEDVKSMLENFEEIIKLAKVENESQLNRMTK*NK 266
           E+  ++R   QN+         R   KE++K  LE   E ++ AK +NE Q N +    +
Sbjct: 279 EKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAYE 338

Query: 267 THLKCKSG 290
           T++    G
Sbjct: 339 TNIFAVQG 346


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 93  EQTNMQRSLPQNKEALLKSYTTR--LKEDVKSMLENFEEIIKLAKVENESQLNRMTK*NK 266
           E+  ++R   QN+         R   KE++K  LE   E ++ AK +NE Q N +    +
Sbjct: 279 EKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAYE 338

Query: 267 THLKCKSG 290
           T++    G
Sbjct: 339 TNIFAVQG 346


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 93  EQTNMQRSLPQNKEALLKSYTTR--LKEDVKSMLENFEEIIKLAKVENESQLNRMTK*NK 266
           E+  ++R   QN+         R   KE++K  LE   E ++ AK +NE Q N +    +
Sbjct: 262 EKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAYE 321

Query: 267 THLKCKSG 290
           T++    G
Sbjct: 322 TNIFAVQG 329


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 81  LSNKEQTNMQRSLPQNKEALLKSYTTRLK---EDVKSMLENFEEIIKLAKVENESQLNRM 251
           ++N+ +  +   L QN++++  SY  RLK   E  +  +   EE  ++ + E + ++  +
Sbjct: 284 IANQRRNMLIEELDQNQQSIEASYNNRLKEMEERCRGRIAAMEEKFRMERHEMQKEIENI 343

Query: 252 TK 257
            K
Sbjct: 344 EK 345


>AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical
           protein K10B4.3 protein.
          Length = 871

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 120 PQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMT 254
           PQ   ALL  Y + + ++    L  F   +KLA   NE   NR T
Sbjct: 252 PQMSTALLNIYMSLISQNRTKSLSQFLPTLKLAAQSNEFINNRTT 296


>U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical protein
            F20D12.2 protein.
          Length = 1116

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 156  TRLKEDVKSMLENFEEIIK---LAKVENESQLNRMTK*NKTHLK 278
            T LKE +K   E+FE++ +     K ++E  ++   K N  H+K
Sbjct: 1038 TELKEKIKRKRESFEKVFEEHSKKKKQDEELISNEAKANSVHMK 1081


>U39852-8|AAK39261.2|  113|Caenorhabditis elegans Hypothetical
           protein K10C2.6 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 229 FSTFANFIISSKFSNMLLTSSFNLVVY 149
           +STFANF+   +F N L + +F   ++
Sbjct: 66  YSTFANFVFWFQFENSLKSEAFKFTLF 92


>AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10a protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 254 EIEQDTFEMQVRAANIVRAGESLMKLVS 337
           E+E++T E+ V A N V  GESL   VS
Sbjct: 250 EVEKETVELPVLALNEVFIGESLSSRVS 277


>AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10b protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 254 EIEQDTFEMQVRAANIVRAGESLMKLVS 337
           E+E++T E+ V A N V  GESL   VS
Sbjct: 311 EVEKETVELPVLALNEVFIGESLSSRVS 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,790,510
Number of Sequences: 27780
Number of extensions: 207326
Number of successful extensions: 661
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)