Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0176
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07950.1 68414.m00864 surfeit locus protein 5 family protein ...    67   8e-12
At1g16430.1 68414.m01965 surfeit locus protein 5 family protein ...    64   6e-11
At1g26310.1 68414.m03209 MADS-box protein, putative strong simil...    30   1.1  
At2g29620.1 68415.m03598 expressed protein                             30   1.5  
At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37) iden...    29   1.9  
At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein...    29   3.4  
At4g31990.2 68417.m04554 aspartate aminotransferase, chloroplast...    28   4.4  
At4g31990.1 68417.m04553 aspartate aminotransferase, chloroplast...    28   4.4  
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    27   7.8  

>At1g07950.1 68414.m00864 surfeit locus protein 5 family protein /
           SURF5 family protein similar to Surfeit locus protein 5
           (SP:Q15528) {Homo sapiens}
          Length = 154

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 30/82 (36%), Positives = 57/82 (69%)
 Frame = +2

Query: 263 QDTFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQQECDQK 442
           Q+T+ M++RA+ +V+A +SL+KLVS++KQ  I + F S+N+ + Q  + F  + ++ ++ 
Sbjct: 65  QETYMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRL 124

Query: 443 LMSLRDDIAADLYDLEDEYFTS 508
           L  + DD +A+L +LE  Y++S
Sbjct: 125 LARIADDASANLKELESHYYSS 146


>At1g16430.1 68414.m01965 surfeit locus protein 5 family protein /
           SURF5 family protein similar to Surfeit locus protein 5
           (surf5) (SP:Q62276) [Mus musculus]; similar to Surfeit
           locus protein 5 (SP:Q15528) [Homo sapiens]
          Length = 150

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 29/82 (35%), Positives = 54/82 (65%)
 Frame = +2

Query: 263 QDTFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQQECDQK 442
           Q+ + M++RA+ +V+A +SL+KLVS++KQ  I + F S+N+ + Q    F  + ++ ++ 
Sbjct: 62  QEAYMMEMRASRLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNRL 121

Query: 443 LMSLRDDIAADLYDLEDEYFTS 508
           L  + DD +A L +LE  Y++S
Sbjct: 122 LARIADDASASLKELESHYYSS 143


>At1g26310.1 68414.m03209 MADS-box protein, putative strong
           similarity to DNA-binding protein [Brassica rapa subsp.
           pekinensis] GI:6469345, SP|Q41276 Floral homeotic
           protein APETALA1 (MADS C) {Sinapis alba}; contains
           InterPro accession IPR002100: Transcription factor,
           MADS-box
          Length = 255

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +2

Query: 212 IGKSRE*ISIKQNDEIEQ--DTFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNE 385
           +G+  E +S+K    +EQ  +T    +R+       ESL  L    K+  I  +   + +
Sbjct: 115 LGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKE--IQEENSMLTK 172

Query: 386 AITQNSKLFRTKQQECDQKLMSLRD 460
            I +   + RTKQ +C+Q   S+ D
Sbjct: 173 QIKERENILRTKQTQCEQLNRSVDD 197


>At2g29620.1 68415.m03598 expressed protein
          Length = 747

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +3

Query: 69  SYASLSNKEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNR 248
           S AS  N+E  N++ ++PQ+  A  K       E++K + EN  + IK++   +E + + 
Sbjct: 559 SLASPENEEARNLEPTVPQSDSAFFKR-----DEELKELSENSADEIKISYDSDEHEPSE 613

Query: 249 MT 254
            T
Sbjct: 614 RT 615


>At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37)
           identical to FKBP12 interacting protein (FIP37)
           GI:3859944 from [Arabidopsis thaliana]
          Length = 330

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 28/105 (26%), Positives = 54/105 (51%)
 Frame = +2

Query: 209 KIGKSRE*ISIKQNDEIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEA 388
           +I K +E   I Q  + EQ+  E++    + VR  +S +K  S   + L+L+  P+++E 
Sbjct: 125 EIAKRKEASCIVQYAKREQEMAELK----SAVRDLKSQLKPASMQARRLLLD--PAIHEE 178

Query: 389 ITQNSKLFRTKQQECDQKLMSLRDDIAADLYDLEDEYFTSFISKC 523
            ++   L   K    D+K+  L+D+IAA  +  + +     ++KC
Sbjct: 179 FSRLKNLVEEK----DKKIKELQDNIAAVTFTPQSKNGKMLMAKC 219


>At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein
           contains Pfam profile PF00488: MutS domain V
          Length = 857

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +3

Query: 93  EQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTK*NKTH 272
           E  +    L + + ALLK  T +++ED+ S     E ++  A+ E++ ++ +  + N   
Sbjct: 625 ELEHESHDLDKRERALLKKETQKVQEDLNSAKSKMERLV--AEFESQLEITQADQYNSLI 682

Query: 273 LKCKSGL 293
           LK +  +
Sbjct: 683 LKTEEAV 689


>At4g31990.2 68417.m04554 aspartate aminotransferase, chloroplast /
           transaminase A (ASP5) (AAT1) nearly identical to
           SP|P46248 Aspartate aminotransferase, chloroplast
           precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis
           thaliana}
          Length = 453

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 269 TFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQ 397
           T E+Q    N+V+  E+LM    D K+YL +    + N+A  +
Sbjct: 89  TEELQPYVLNVVKKAENLMLERGDNKEYLPIEGLAAFNKATAE 131


>At4g31990.1 68417.m04553 aspartate aminotransferase, chloroplast /
           transaminase A (ASP5) (AAT1) nearly identical to
           SP|P46248 Aspartate aminotransferase, chloroplast
           precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis
           thaliana}
          Length = 453

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 269 TFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQ 397
           T E+Q    N+V+  E+LM    D K+YL +    + N+A  +
Sbjct: 89  TEELQPYVLNVVKKAENLMLERGDNKEYLPIEGLAAFNKATAE 131


>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1219

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 453  KDINFWSHSCCFVRNNFEFWV 391
            K+++  S+SCC+ + +FEF+V
Sbjct: 1111 KNVHGESNSCCYTKASFEFYV 1131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,656,240
Number of Sequences: 28952
Number of extensions: 176022
Number of successful extensions: 485
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)