Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0175
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    30   0.25 
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    28   0.99 
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    25   9.2  

>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 191 IWRHTLNDFKIWRHT 147
           +WR TL+ F +WRHT
Sbjct: 138 VWRETLDSFLVWRHT 152


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 198 IVKYVPQQIKG*ESLIYILKENIYLYACSPKTREALALLI*NF 326
           I K + QQIK     + I+ E +  Y  SPK RE +  L  NF
Sbjct: 357 ITKLIEQQIKPDLESMLIISEYLNEYKPSPKMRELINWLYSNF 399


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 220 CCGTYLTILKFGGTH*TILKFGGTQRKIFKLF 125
           CCG  +T     G   TILKF      ++K F
Sbjct: 11  CCGAVVTAFSVIGIVFTILKFTSFASFVYKTF 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,168
Number of Sequences: 5004
Number of extensions: 49333
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)