Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0175
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692...    27   9.5  

>03_02_0259 -
           6920472-6920579,6920744-6921022,6921115-6921390,
           6921473-6921691,6921795-6921963,6922248-6922422,
           6922490-6922601,6923343-6923573
          Length = 522

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 463 NVRMYVCSPKITLRSCFLNRLM 528
           N+R  +CSPK+ + SCF+  ++
Sbjct: 220 NLRRVLCSPKVDVPSCFVGLVL 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,131
Number of Sequences: 37544
Number of extensions: 262981
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)