Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0174
         (542 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   2.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   4.0  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   4.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   5.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   5.3  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   7.0  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 254 GAKNSMIQISSEFVSNLSKLLGVSSITSEDES*RAKDPVAQSKIP 120
           G+K ++  I ++++++  K LGVS      +      PV +  IP
Sbjct: 22  GSKKTVFDIPNDYLNDKYKPLGVSLSNRFKQDAEETVPVKKISIP 66


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 336 LDADEHRSVSQKYGVTGFPTIKIFTG 413
           +DA      ++ YGV GF  I  FTG
Sbjct: 279 IDAGMSGPYTKGYGVMGFNEICEFTG 304


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 220 NL*VICRNYSVSAR*RLKTNRRGPRTPLHRARYLLNI 110
           N+  I  ++SVS   R++ N  GP   +    Y+L+I
Sbjct: 40  NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSI 76


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 6   FYVFKLHIVVCC 41
           F +F +H++ CC
Sbjct: 173 FIIFTMHLLFCC 184



 Score = 21.0 bits (42), Expect = 7.0
 Identities = 4/13 (30%), Positives = 10/13 (76%)
 Frame = +3

Query: 3   LFYVFKLHIVVCC 41
           ++Y + +H++ CC
Sbjct: 258 IYYFYYMHLLFCC 270


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 137 QRGPWPSTIRLQTLSS 184
           +RGP  ST+R Q +SS
Sbjct: 113 ERGPRNSTLRRQQMSS 128


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 137 QRGPWPSTIRLQTLSS 184
           +RGP  ST+R Q +SS
Sbjct: 113 ERGPRNSTLRRQQMSS 128


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 12  VFKLHIVVCCESRSQKFYNRLF 77
           +F L  V CC++    F  ++F
Sbjct: 154 IFNLVYVYCCDNNFNVFLRQVF 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,785
Number of Sequences: 336
Number of extensions: 2689
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)