Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0174
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.66 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   2.7  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   2.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.1  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 481 PRRRHMKISARNRVGT 528
           PR  H+K+S  NRVG+
Sbjct: 385 PRSTHLKVSGINRVGS 400


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 312 KGIVKVGALDADEHRSVSQKYGVT 383
           KGI+K   L+  EHRS S K G+T
Sbjct: 587 KGIMKTYWLEKREHRSSSTK-GIT 609


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 299 CQSSKGHCKSRCL 337
           CQ+  GHC   CL
Sbjct: 36  CQAVNGHCSHLCL 48


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 299 CQSSKGHCKSRCL 337
           CQ+  GHC   CL
Sbjct: 36  CQAVNGHCSHLCL 48


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 427 GVCLLPVNILIVGKPVTPYFCDTLLCSSAS 338
           G  LL + +L    P+   FC  L CS+A+
Sbjct: 134 GWLLLMLYLLFATLPLRLSFCVVLACSTAT 163


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 362 ITEIWSHW-LPHN*DIHREQAHTISRSEDSRRIC*SC 469
           ++ ++SH+   +N ++ RE+    + +ED   +C  C
Sbjct: 238 VSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGC 274


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 220 NL*VICRNYSVSAR*RLKTNRRGPRTPLHRARYLLNI 110
           N+  I  ++SVS   R++ N  GP   +    Y+L+I
Sbjct: 11  NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSI 47


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 220 NL*VICRNYSVSAR*RLKTNRRGPRTPLHRARYLLNI 110
           N+  I  ++SVS   R++ N  GP   +    Y+L+I
Sbjct: 11  NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSI 47


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 326 FYNAL*SSGSFFIFGNKAFTMSTPGAKNSMIQISSE 219
           F+N   S+  +F+FG+  F   T G    + + + E
Sbjct: 213 FHNDKYSNVPYFLFGDFNFRTDTAGVIKKLTEDTQE 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,482
Number of Sequences: 438
Number of extensions: 3711
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)