Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0171
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       27   0.059
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   0.55 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   2.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   5.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   9.0  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 0.059
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 173 PIHVDVLYHGRPQSPDR 123
           PIH  V+YH  P+ P+R
Sbjct: 45  PIHQTVIYHNNPRDPNR 61


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 196 LVRLQIEVQFTWMYYITVDH 137
           L RL +E  F W+YY +  H
Sbjct: 73  LARLAVEAGFDWVYYESRAH 92


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 97  QEESRVMTFLYKNEQYFWFSVQSR 26
           Q    V+  LYKN+Q +W  ++++
Sbjct: 83  QGAKTVIQHLYKNKQDWWKQLEAK 106


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 62  LVQKRHHTRFFLPGNNAR 115
           L+Q+R HTR     +N R
Sbjct: 273 LIQRRTHTRHTTTSHNTR 290


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 329 YPTPTYY 349
           YP PTYY
Sbjct: 87  YPNPTYY 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,392
Number of Sequences: 336
Number of extensions: 2084
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)