Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0171
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    68   6e-13
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   1.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   5.1  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   5.1  
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   6.7  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   6.7  
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1...    25   6.7  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    24   8.9  

>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 834

 Score = 68.1 bits (159), Expect = 6e-13
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
 Frame = +2

Query: 44   PEVLFILVQKRHHTRFFLPGNN---ARFNVYPGTVVDRDIVHPRELDFYLESYQAIKGTA 214
            P++L    QKRHH RFF+   +      N  PGT++++ + HP + DFYL S+ +++G +
Sbjct: 682  PKILVCTTQKRHHARFFIKNKSDGDRNGNPLPGTIIEKHVTHPYQYDFYLISHPSLQGVS 741

Query: 215  RPTRYHAVCND-GXXXXXXXXXXXXXCAICTRVVCRAVSYPTPTYYAHLACLRAR 376
             P  Y  + ++               C +  R    AVS   P YYAHL    AR
Sbjct: 742  VPVHYTVLHDEIQMPPDQFQTLCYNLCYVYARAT-SAVSLVPPVYYAHLVSNLAR 795


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 265 EVEHLAYYLCHLYARCMPRCVL 330
           EVE     +CHLY RC+  C L
Sbjct: 293 EVEGDFQRICHLYERCLITCAL 314


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 241 QRRQDPENEVEHLAYYLCHLYA 306
           Q+  D E EV+HL  + C LY+
Sbjct: 516 QKTNDYELEVQHLFTWTCELYS 537


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 122 VYPGTVVDRDIVHPRELDFYLESYQAIKGTARPTRYHAVCNDG 250
           +YPG   D D + P  L++Y    +  K  A  ++  A  +DG
Sbjct: 378 LYPGKDEDIDTILPNVLEYYRHLEEEEKDEAERSKRKAEESDG 420


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 28  GIER*TRSIVHSCTKTSSHEILPAREQRPFQRLSGDCGRP*YSTST*IGLLFGVLPSD 201
           GI+   R+I  +  KTSS +      QR F RL+   G   + T   IG    +L SD
Sbjct: 36  GIDISERAISKAIDKTSSEKSNVNFNQRDFSRLNEFKGH--FDTVIDIGCFHSILNSD 91


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 28  GIER*TRSIVHSCTKTSSHEILPAREQRPFQRLSGDCGRP*YSTST*IGLLFGVLPSD 201
           GI+   R+I  +  KTSS +      QR F RL+   G   + T   IG    +L SD
Sbjct: 36  GIDISERAISKAIDKTSSEKSNVNFNQRDFSRLNEFKGH--FDTVIDIGCFHSILNSD 91


>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 28  GIER*TRSIVHSCTKTSSHEILPAREQRPFQRLSGDCGRP*YSTST*IGLLFGVLPSD 201
           GI+   R+I  +  KTSS +      QR F RL+   G   + T   IG    +L SD
Sbjct: 36  GIDISERAISKAIDKTSSEKSNVNFNQRDFSRLNEFKGH--FDTVIDIGCFHSILNSD 91


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 163 WMYYITVDHSPRIDV 119
           W YY+  +H  RIDV
Sbjct: 168 WRYYVEKEHPVRIDV 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,654
Number of Sequences: 5004
Number of extensions: 32601
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)