Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0171
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41291| Best HMM Match : Piwi (HMM E-Value=0)                        53   1e-07
SB_53439| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   4e-06
SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33)                  47   6e-06
SB_9279| Best HMM Match : Piwi (HMM E-Value=0)                         46   1e-05
SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   1e-04
SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)             27   6.8  
SB_42929| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_21866| Best HMM Match : UCH (HMM E-Value=0)                         27   8.9  

>SB_41291| Best HMM Match : Piwi (HMM E-Value=0)
          Length = 598

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
 Frame = +2

Query: 8   RAYQRVAGLNAK---PEVLFILVQKRHHTRFFLP-GNNARF---NVYPGTVVDRDIVHPR 166
           RA Q+   +  K   P + F++VQKRHH R F   G +AR    NV  GT VD  I HP 
Sbjct: 363 RAVQQACAMLEKDYQPLITFVVVQKRHHARLFAEEGRDARGKSRNVPAGTTVDTVICHPF 422

Query: 167 ELDFYLESYQAIK 205
           E DFYL S+  I+
Sbjct: 423 EFDFYLCSHAGIQ 435


>SB_53439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 206 GTARPTRYHAVCND-GXXXXXXXXXXXXXCAICTRVVCRAVSYPTPTYYAHLACLRARSL 382
           GT+RPT YH + +D G             C    R   R+VS P P YYAHLA  RAR L
Sbjct: 1   GTSRPTHYHVLYDDNGFSADKLQALTYQLCHTFARCT-RSVSMPAPAYYAHLAAFRARGL 59


>SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33)
          Length = 952

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +2

Query: 44   PEVLFILVQKRHHTRFFL--PGNNAR--FNVYPGTVVDRDIVHPRELDFYLESYQAIKGT 211
            PE+   +VQKR   RF+   PG   R   N  PGT+VD  +  P   DF+L S    +GT
Sbjct: 802  PELAVTIVQKRILPRFYAVRPGRGGRDYSNPPPGTLVDTVVTRPHCFDFFLVSQSVRQGT 861

Query: 212  ARPTRYHAVCN 244
              P+ Y  + N
Sbjct: 862  VTPSHYTVIYN 872


>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
          Length = 941

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +2

Query: 44  PEVLFILVQKRHHTRFFL-----PGNNARFNVYPGTVVDRDIVHPRELDFYLESYQAIKG 208
           P+  F +V+KR  TR F+     P      N  PGTVVD+++      DF++ S    +G
Sbjct: 638 PKFGFTVVKKRIQTRLFMREARDPDMRNLMNPPPGTVVDKEVTRSEWFDFFIVSQSVRQG 697

Query: 209 TARPTRYHAV 238
           T  PT Y+ +
Sbjct: 698 TVSPTHYNVI 707


>SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +2

Query: 29  GLNAKPEVLFILVQKRHHTRFFLP---GNNARF-NVYPGTVVDRDIVHPRELDFYLESYQ 196
           G + KP++  ++VQKR +TR F     G   R  N  PG+V+D  +      DF+L S  
Sbjct: 413 GESYKPKLAVLVVQKRINTRIFSAEGRGPQPRLGNPGPGSVLDHTVTRKDWNDFFLVSQH 472

Query: 197 AIKGTARPTRYHAV 238
             +GT  PT Y  V
Sbjct: 473 VRQGTVTPTHYVVV 486


>SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)
          Length = 810

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 79  SHEILPAREQRPFQRLSGDC 138
           SHE+LPA   RP  R+ G C
Sbjct: 606 SHEVLPATTGRPPARVIGSC 625


>SB_42929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 8   RAYQRVAGLNAKPEVLFILVQKRHHTRFFLPGNNARFNVYP 130
           R   R+ GLN  P++L    + R HT    P  + + N  P
Sbjct: 8   RNKDRLEGLNEVPQILVQKTRCRRHTDSLQPYRSGQLNFVP 48


>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
          Length = 2165

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -2

Query: 139  HSPRIDVETGVVPGQEESRVMTFLYKNEQYF----WFSVQSRD 23
            H  R+D   G +PG  ES  +  L+  +Q +     FSV +RD
Sbjct: 1854 HHTRLDGPCGPIPGLPESEALFSLFTRDQSYTPVALFSVFTRD 1896


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,352,155
Number of Sequences: 59808
Number of extensions: 285205
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)