Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0171
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   1.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 290 CAICTRVVCRAVSYPTPTYYAH 355
           C IC RV C   S  T  Y  H
Sbjct: 38  CVICERVYCSRNSLMTHIYTYH 59


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 184 GVLPSDQGHGSSDALPRRLQRRQDPENE 267
           G  PS  G  S++ALP+ + +R+D E++
Sbjct: 48  GRRPSTFG-SSNEALPQPISKRKDKEHK 74



 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 164 RELDFYLESYQAIKGTARPTRYHAVC 241
           ++L+F +  ++ +KG A P  +   C
Sbjct: 400 KKLEFVVGQHRILKGPANPDIFRVSC 425


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 184 GVLPSDQGHGSSDALPRRLQRRQDPENE 267
           G  PS  G  S++ALP+ + +R+D E++
Sbjct: 48  GRRPSTFG-SSNEALPQPISKRKDKEHK 74


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 164 RELDFYLESYQAIKGTARPTRYHAVC 241
           ++L+F +  ++ +KG A P  +   C
Sbjct: 106 KKLEFVVGQHRILKGPANPDIFRVSC 131


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 302 TRVVCRAVSYPTPTY 346
           T +VC A + PTP Y
Sbjct: 255 TSLVCVAQACPTPEY 269


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 302 TRVVCRAVSYPTPTY 346
           T +VC A + PTP Y
Sbjct: 255 TSLVCVAQACPTPEY 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,906
Number of Sequences: 438
Number of extensions: 2624
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)