Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0170
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.4  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   9.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.8  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 310 FIIVNVLRIPVCHSMICTYIVSFLYFI 390
           FII+ V+   VC+ MI      F ++I
Sbjct: 502 FIIIPVILTSVCYFMIGLNSQGFRFYI 528


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 112 TCPSCHASVMTKITTKASTK 171
           T  +   ++ TK TTK STK
Sbjct: 165 TSTTTRTTLTTKFTTKPSTK 184


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 555 VGFSENNHLHSAPD 514
           VG+ ENNH +  P+
Sbjct: 435 VGYYENNHYNGDPN 448


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/18 (33%), Positives = 8/18 (44%)
 Frame = +3

Query: 132 VGHDQNHDQSQHEDSHHR 185
           +GH       QH   HH+
Sbjct: 167 MGHHMQEQHPQHHQPHHQ 184


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/18 (33%), Positives = 8/18 (44%)
 Frame = +3

Query: 132 VGHDQNHDQSQHEDSHHR 185
           +GH       QH   HH+
Sbjct: 169 MGHHMQEQHPQHHQPHHQ 186


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 555 VGFSENNHLHSAPD 514
           VG+ ENNH +  P+
Sbjct: 383 VGYYENNHYNGDPN 396


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,796
Number of Sequences: 336
Number of extensions: 3788
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)