Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0170
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 30 0.37
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 29 0.65
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 27 2.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.0
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 27 2.0
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 26 6.1
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 6.1
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 26 6.1
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 8.0
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 29.9 bits (64), Expect = 0.37
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 348 FDDLHLYSFVFIFHIHMINLKFGLMLYSSVEYILQLHLKALAVVNVLYLLIIQVSSQVLS 527
F D+ +Y +FH H KF L SS L L K +V N++Y+ I S +
Sbjct: 618 FSDVTIYCGTSMFHSH----KFILCARSSFLRKLLLQKKKSSVSNIIYIEEITQSHSTIR 673
Query: 528 VDD 536
V+D
Sbjct: 674 VED 676
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 29.1 bits (62), Expect = 0.65
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 354 DLHLYSFVFIFHIHMINLK-FGLMLYSSVEYILQLHLKALAVVNVLYLLII 503
D++ ++ IF + +I + FG+ ++ VE++L L +K +A V + L II
Sbjct: 186 DVNCAVWISIFLVVVIGINLFGVRVFGEVEFVLAL-IKVVATVGFIILAII 235
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 138 HDQNHDQSQHEDSHHRT-DPVFVHVFALRMSAILHGLVHESDHYCPNCNAYIGTYTR*FH 314
+++N++ +E+ H + D F F L++ I L S HY + + + F
Sbjct: 62 NEENNEIETNEEMHVNSHDYAFPQEFFLKLLDIDMPLEQLSQHYFEDYKSNSADFMLTFI 121
Query: 315 NCERIAYSCMPF 350
N +A C PF
Sbjct: 122 NFALVASGCQPF 133
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = -1
Query: 327 YVHNYEIILYRFQCRRCSLDSNGPIHARVHAVWQTYARQTHAQ 199
Y+ ++L ++C C+ + G +HA + ++ + R+TH +
Sbjct: 218 YIRGLPVLLNGYECVPCTKNGTGFVHA-IMDTFRHHVRRTHGK 259
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = -1
Query: 327 YVHNYEIILYRFQCRRCSLDSNGPIHARVHAVWQTYARQTHAQ 199
Y+ ++L ++C C+ + G +HA + ++ + R+TH +
Sbjct: 218 YIRGLPVLLNGYECVPCTKNGTGFVHA-IMDTFRHHVRRTHGK 259
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 65 FDRSRWSQSVQIQHR*PVHRATR 133
F R+ W++ V Q R P+HRA R
Sbjct: 181 FQRNNWNRVVAFQTRNPMHRAHR 203
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 252 ESDHYCPNCN 281
ESD YCPNC+
Sbjct: 62 ESDEYCPNCD 71
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = -1
Query: 150 DFGHDRRVARWTGYLCWIWTDCDHLDRSKL 61
D R+ A W Y W DC H +++
Sbjct: 590 DGNRRRKAAFWFAYSAGFWRDCGHCKMAEI 619
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Frame = +3
Query: 318 CERIAYSCMPFDDLHL----YSFVFIFH-IHMINLKFGLMLYSSVEYILQLHLKALA-VV 479
C+R SC+ D+ H Y++V + H + + N F ++ S+ L+A+ V+
Sbjct: 185 CDRTRISCLVIDEAHRSTGNYAYVEVVHLLSLSNKNFRILALSATP---GNKLEAIQNVI 241
Query: 480 NVLYLLIIQVSSQ-VLSVDDYFQK 548
+ L++ I++ ++ + + Y QK
Sbjct: 242 DSLHISRIEIRTENSIDISQYVQK 265
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 177 HHRTDPVFVHVFALRMSAILHGLVHESD 260
H + V VH+F R+ + +GL++ES+
Sbjct: 108 HFKLSKVKVHLFFCRLKLLDYGLLNESE 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,198
Number of Sequences: 5004
Number of extensions: 60243
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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