Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0170
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0478 + 17621678-17623768 31 0.68
10_08_0485 + 18235597-18236256,18236353-18236400,18236522-182366... 29 2.7
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 29 3.6
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 29 3.6
06_03_0743 + 24069752-24070483,24071890-24072345 29 3.6
09_04_0244 - 15984862-15984978,15985054-15985119,15985701-159857... 28 6.3
06_03_0470 - 21113186-21114183,21114273-21115824 28 6.3
06_03_0467 - 21066354-21066501,21066831-21066893,21067223-210672... 28 6.3
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 28 8.4
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 28 8.4
>08_02_0478 + 17621678-17623768
Length = 696
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 231 ILHGLVHES--DHYCPNCNAYIGTYTR*FHNC-ERIAYSC 341
++HGLV +S + P CNA I YTR NC AY C
Sbjct: 318 VIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKC 357
>10_08_0485 +
18235597-18236256,18236353-18236400,18236522-18236644,
18237062-18237211,18237702-18237873,18237965-18238025,
18238129-18238237
Length = 440
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +3
Query: 393 HMINLKFGLMLYSSVEY--ILQLHLKALAVVNVLYLLIIQVSSQVLSVDDYFQKILQGYL 566
HMI L++ S + + L HL+ L + +VL LL + +S YF +G L
Sbjct: 328 HMIIGGLPLLVISVLNHDPALNGHLQELTLNDVLALLYTSIFGSAISYGVYFYNATRGSL 387
Query: 567 TSCIYL*FLIFKSLEIF 617
T+ L FL IF
Sbjct: 388 TTLSSLTFLTPMFASIF 404
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 451 CKIYSTELYNIKPNLRLIM*I*NIKTKLYKCKSSNGIQEY 332
C YS EL+N PN+R I + N T +S + Q+Y
Sbjct: 92 CNPYSAELFNAGPNIRTIPFLCN-STSSSSAQSKDSTQDY 130
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 78 DGHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHR 185
DG +S S S+ HD +H+ + HE+ H+
Sbjct: 740 DGPCKSMVSCKESSVAKNACHDHHHEHNHHEEPAHK 775
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 114 LSIVPRVGHDQNHDQSQHEDSHH 182
LS+ P HD +H +H+ HH
Sbjct: 65 LSLTPSTTHDDDHHHRRHDQDHH 87
>09_04_0244 -
15984862-15984978,15985054-15985119,15985701-15985793,
15987284-15987410,15988710-15988840,15989485-15989766,
15989852-15989985,15990083-15990292,15990456-15990486
Length = 396
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 277 ATPTLEPIQDNFIIVNVLRIPVCHSMICTYIVS 375
A T+EP Q + +V + +PVC+SM+C +++
Sbjct: 150 AVVTIEP-QFDLPLVKLHDVPVCYSMLCRPVIA 181
>06_03_0470 - 21113186-21114183,21114273-21115824
Length = 849
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 369 SFVFIFHIHMINLKFGLMLYSSVEYILQLHLKALAVVNVLYLL-IIQVSSQVLSVDDYFQ 545
SF F+F +H++N FG + ++ L + VVN + LL +V VL DD ++
Sbjct: 567 SFEFVFLLHLMNDIFGY----TADFCQALQKREQDVVNAMDLLAFTKVELDVLREDDGWR 622
Query: 546 KILQGYLTS-CI 578
+ G +TS C+
Sbjct: 623 E-FHGKVTSFCV 633
>06_03_0467 -
21066354-21066501,21066831-21066893,21067223-21067291,
21067666-21067742,21069451-21069558,21070008-21070274,
21071964-21072607,21073370-21073550,21073688-21073834
Length = 567
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 81 GHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRT 188
G++ S SS + V R GH Q Q + E H+T
Sbjct: 152 GNASSSSSASAAAAVARHGHQQQQQQQRSETRWHKT 187
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 135 RRVARWTGYLCWIWTDCDHLDRSKLSTTQYERLKMNVFFI 16
R V +GY +WT C+ LD + Q E+ K+N F+
Sbjct: 93 RNVGLPSGY-SHLWTACNSLDTDQHQEVQQEQTKVNEEFV 131
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 126 PRVGHDQNHDQSQHEDSHHR-TDPVFVHVFALRMSAILHGLVHESDHYCPNCNA 284
P + H ++ +QH SH R T V ++ GLV +S Y P A
Sbjct: 316 PSLSHSSMYNHNQHRKSHSRVTAAAIATVTGTAFVLLIVGLVLKSCTYSPKSTA 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,847,433
Number of Sequences: 37544
Number of extensions: 361090
Number of successful extensions: 946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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