Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0170
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                    30   2.1  
SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)               29   2.8  
SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)           29   3.7  
SB_53128| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.1)             29   4.9  
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.5  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 283 PTLEPIQDN-FIIVNVLRIPVCHSMICTYIVSFLYF 387
           PT+EP QDN FI V    +P  +  ICT+I    YF
Sbjct: 107 PTIEPYQDNVFINVICRNLPQWNDRICTHIKLIKYF 142


>SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 138 HDQNHDQSQHEDSHHRTD 191
           HD +HD   H+D HH  D
Sbjct: 108 HDDDHDDDDHDDDHHHHD 125


>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +3

Query: 381 IFHIHMINLKFGLMLYSSVEYILQLHLKALAVVNVLYLLIIQVSSQVLSVDDYFQKILQG 560
           +F+   INLK+G   Y+   Y L  + KA+A VN   L     + ++L   D F K + G
Sbjct: 556 VFYTKAINLKYGHFRYARAYYELGYYEKAVA-VNEHALKRCSETRELLHQADEFAKAIAG 614


>SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
          Length = 744

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 63  VLIDQDGHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRTDPVFVH 206
           V ++Q+GH ++ SS       P   + + HDQ+    S + + PV V+
Sbjct: 263 VPVNQEGHDQTSSSVSGDDSAPVPVNQEGHDQTSSPVSGYDSAPVLVN 310


>SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)
          Length = 291

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 84  HSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRT 188
           HS +R STG         H   HD  QH+ + H T
Sbjct: 175 HSTTRHSTGTTGHDTTQNHTVQHDTVQHDTAQHDT 209


>SB_53128| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.1)
          Length = 310

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = -2

Query: 527 TQHLTRHLDDEEIKHIHH---RQCFKMKLQNILHRAIQH*AELKIDH 396
           TQH  RH     I+H      R   +   Q+   R IQH  +L I H
Sbjct: 230 TQHTIRHATQHTIRHATQRTKRHATQRTKQHATQRTIQHATQLTIQH 276


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 78   DGHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRTD 191
            + H R R S  +     +  H  +H   QH DSHH  +
Sbjct: 944  ESHKRHRHSHHHHYQHYQYNHHHDHQSHQHHDSHHHRE 981


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 261  HYCPNCNAYIGTYTR*FHNCERI--AYSCMP 347
            HYCPN +A I      +HN  RI     CMP
Sbjct: 2447 HYCPNGSAPISCPAGFYHNAGRIWNRTQCMP 2477


>SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 141 DQNHDQSQHEDSHHRT 188
           D  HD S+H+DS H T
Sbjct: 77  DSEHDDSEHDDSEHET 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,056,973
Number of Sequences: 59808
Number of extensions: 437032
Number of successful extensions: 1449
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)