Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0169
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    88   8e-19
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   3.9  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    26   5.1  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   5.1  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   5.1  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   6.8  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.8  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 88.2 bits (209), Expect = 8e-19
 Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
 Frame = +3

Query: 255 DIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKD-MTGKDDEYRPAAIR 431
           ++FF  TKLFQ KD  LR+ VY+ IKELS +A+DVI++TSS+ KD  TG++  YRP AIR
Sbjct: 64  ELFFGITKLFQHKDPSLRQFVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIR 123

Query: 432 ALCSITDSTMLQAIERYMKQAIVD 503
           +L  + D+  + AIER +   IVD
Sbjct: 124 SLIRVIDANTVPAIERILTTGIVD 147



 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 25/76 (32%), Positives = 43/76 (56%)
 Frame = +1

Query: 67  MKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQ 246
           M   +   + D ++F N+++ T+ Q+AR FNS+ + PRK   +L+KI YL+  GE    +
Sbjct: 1   MSYSKKDDDGDESIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEK 60

Query: 247 EATIYFLPLRNCFSQR 294
           +AT  F  +   F  +
Sbjct: 61  QATELFFGITKLFQHK 76


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 207  TLFTKPRRRINHAGGYDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDV 359
            ++  +P+ R     G+DIFFA         ++ R + Y  ++  S  + D+
Sbjct: 1113 SIIIEPKIRFLEKDGHDIFFAAVNASTFSLIIFRAIEYALVQAESFGSSDI 1163


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 532 QCGRSYCRFLSTIACFMYLSIACSIVLSVMLHKARMAAGRYSSSL 398
           Q G+ +C  L T+ CF   S  C +  +++  K     G Y++ L
Sbjct: 283 QTGKGFCH-LDTLHCFGQASGLCQLEKTLIDRKNNAPEGSYTARL 326


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 154 FNSTPVHPRKCIHILTKILYLLNQGEE 234
           F   PV       I  KIL+LLN+G E
Sbjct: 281 FPQPPVESHSSFDIKQKILHLLNEGNE 307


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 125 LSRFWKTLLSSSFPSRRAFIML 60
           L +FW  LL+++FP ++A   L
Sbjct: 401 LHQFWNALLNTTFPDKKAMAPL 422


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 211 YLLNQGEELTTQEATIYFLPLRNCFSQRTL 300
           Y+L+  +E++T++A    +PL N  +Q+ +
Sbjct: 429 YVLHLTDEMSTEDALFETIPLSNLLAQKRM 458


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 91  EEDSNVFQNLDKTTLLQEARYFNSTPV 171
           EED N  +N  K+ +   A+Y  ST V
Sbjct: 302 EEDPNPLKNKSKSPIAHGAKYMTSTEV 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,954
Number of Sequences: 5004
Number of extensions: 53580
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)