Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0169
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 121 5e-28
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 107 5e-24
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 34 0.11
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926... 31 0.75
02_02_0716 - 13264983-13265195,13265219-13265968,13266307-132664... 31 0.99
11_04_0414 + 17386806-17387936 29 3.0
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921... 29 4.0
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 28 7.0
02_01_0412 - 3005600-3007759 27 9.2
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108... 27 9.2
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 121 bits (291), Expect = 5e-28
Identities = 60/85 (70%), Positives = 66/85 (77%)
Frame = +3
Query: 255 DIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRA 434
++FFA TKLFQSKD LRRLVYL IKELSP + +VIIVTSSL KDM K D YR AIR
Sbjct: 69 EVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYRANAIRV 128
Query: 435 LCSITDSTMLQAIERYMKQAIVDKN 509
LC I D T+L IERY+KQAIVDKN
Sbjct: 129 LCRIIDGTLLTQIERYLKQAIVDKN 153
Score = 64.1 bits (149), Expect = 9e-11
Identities = 31/79 (39%), Positives = 45/79 (56%)
Frame = +1
Query: 58 QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 237
Q MK D ++ + + F ++K +LQEAR F+ + RKC ++TK+LYLLNQGE
Sbjct: 3 QPYMKKDDDDEDVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETF 62
Query: 238 TTQEATIYFLPLRNCFSQR 294
T EAT F + F +
Sbjct: 63 TKVEATEVFFAVTKLFQSK 81
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 107 bits (258), Expect = 5e-24
Identities = 62/102 (60%), Positives = 68/102 (66%), Gaps = 17/102 (16%)
Frame = +3
Query: 255 DIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD-----------------VIIVTSSLT 383
++FFATTKLFQSKD LRR+VYL IKELSP A + VIIVTSSL
Sbjct: 71 EVFFATTKLFQSKDAGLRRMVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTSSLM 130
Query: 384 KDMTGKDDEYRPAAIRALCSITDSTMLQAIERYMKQAIVDKN 509
KDM K D YR AIR LC I DST+L IERY+KQAIVDKN
Sbjct: 131 KDMNSKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKN 172
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +1
Query: 88 KEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATIYFL 267
+EE + F ++K +LQEAR F+ + R+C ++TK+LYLLNQG+ T EAT F
Sbjct: 15 EEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFF 74
Query: 268 PLRNCFSQR 294
F +
Sbjct: 75 ATTKLFQSK 83
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -3
Query: 611 SHGLPVLHLSSDALNPVRWLTDAKRRPVRQILLQVLINNSLFHVP 477
+H +P+ SS + P RWL +A R V++ +L++L ++ VP
Sbjct: 367 THRIPIEPKSSPSKEPQRWLNNAMREVVKKDVLKLLHTRIIYPVP 411
>07_03_0025 +
12587868-12588429,12591820-12592031,12592212-12592603,
12592608-12592965
Length = 507
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -3
Query: 611 SHGLPVLHLSSDALNPVRWLTDAKRRPVRQILLQVLINNSLFHVP 477
+H +P+ S+ + P RWL +A R V++ +L++L ++ VP
Sbjct: 210 THRIPIDPESTPSREPQRWLNNAMREVVKKEVLKLLHAGIIYPVP 254
>02_02_0716 -
13264983-13265195,13265219-13265968,13266307-13266463,
13266542-13266582
Length = 386
Score = 30.7 bits (66), Expect = 0.99
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 118 LDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATIYFLPLRNCFSQR 294
LD T +L E ST K +H L LYL + E + ++ + + L++ F Q+
Sbjct: 102 LDHTIVLPEVGTVESTKAEKAKALHFLRHHLYLDLKSEYMIEKDPLVLWQSLKDRFDQQ 160
>11_04_0414 + 17386806-17387936
Length = 376
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 309 RLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSI 446
R+VY+C + S++ K +T DE+ PAA A SI
Sbjct: 183 RIVYVCRDPKDAFVSMWLFTMSNMVKGVTTTTDEHHPAAAAAAPSI 228
>09_04_0285 +
16390786-16391291,16391370-16391957,16392034-16392160,
16392291-16392477,16392585-16392741,16392847-16393201
Length = 639
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = +1
Query: 46 ILKEQSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQ 225
I SI++A+ + + + +N+F LDK +L A S + + ++Y+L
Sbjct: 397 IHNSHSILEAQEEFRAKQANIFAALDKLYILHNAILAESRFIKAFFFYCCIVFLIYMLTS 456
Query: 226 GEELTTQEATIYF 264
++ + +YF
Sbjct: 457 AKQTFSIRGHLYF 469
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 488 FHVPLNSLQHCT--VCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHI 354
FHV +HC + + ++SS GG+S + +F+RH R S + +
Sbjct: 122 FHV---CTEHCAAKMAEVSRSSEGGKSPMSLFSRHSRRSSSSEDGSV 165
>02_01_0412 - 3005600-3007759
Length = 719
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 79 GEPSLCSALLIFYCNL 32
G P LCS +L+ +CNL
Sbjct: 660 GNPKLCSPMLVHHCNL 675
>01_04_0136 +
16506747-16506982,16507128-16507728,16510443-16510842,
16513595-16513709,16513776-16514352
Length = 642
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 611 SHGLPVLHLSSDALNPVRWLTDAKRRPVRQILLQVL 504
+H +P+ SS + P RWL +A R +++ +L++L
Sbjct: 574 THCIPIELESSLSREPQRWLNNAMREVIKKEVLKLL 609
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,185,570
Number of Sequences: 37544
Number of extensions: 342824
Number of successful extensions: 985
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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