Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0169
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   2e-26
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)                   29   2.3  
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 29   3.1  
SB_10148| Best HMM Match : Chordopox_A30L (HMM E-Value=7.3)            29   4.1  
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             28   7.1  
SB_40154| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_11945| Best HMM Match : EURL (HMM E-Value=9.7)                      28   7.1  
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score =  116 bits (278), Expect = 2e-26
 Identities = 56/84 (66%), Positives = 69/84 (82%)
 Frame = +3

Query: 258 IFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRAL 437
           I   T  L+    ++LRR+VYL IKEL+ +A+DVIIVTSSLTKDMTGK+D +R +AIRAL
Sbjct: 45  IHILTKILYLINQLMLRRMVYLAIKELANIAEDVIIVTSSLTKDMTGKEDMFRASAIRAL 104

Query: 438 CSITDSTMLQAIERYMKQAIVDKN 509
           C ITD+TMLQ IERY+KQA+VDKN
Sbjct: 105 CRITDNTMLQGIERYLKQAVVDKN 128



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 37/53 (69%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
 Frame = +1

Query: 76  RRDGKEED---SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQ 225
           RRD K+E+   SN FQNLDK  +LQEAR FN TP++ RKCIHILTKILYL+NQ
Sbjct: 5   RRDKKDEEEGLSNPFQNLDKGQVLQEARVFNETPINVRKCIHILTKILYLINQ 57


>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
          Length = 604

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 455 TVCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHILCHRTQLFN 327
           TVCD     N  R +++   + +      HN H   HR   FN
Sbjct: 48  TVCDRHGQLNVSRVLIVFMVKKIATGFHQHNGHTSFHRCHAFN 90


>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -3

Query: 227 PWFSK*SIFVKIWM-HFLGCTGVELKYLA-SCKRVVLSRFWKTLLSSSFPSRRAFIMLCS 54
           PW S   + V +W   F   T V +K +A  C +   SRF     SS    R AF++ C 
Sbjct: 23  PWRSS-KVLVVVWKPKFAAPTIVFVKEMAFRCSKFFASRFSHIRKSSKDIKRSAFLLPCL 81

Query: 53  FNILL*FR 30
             + + +R
Sbjct: 82  LQVFVNYR 89


>SB_10148| Best HMM Match : Chordopox_A30L (HMM E-Value=7.3)
          Length = 139

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 281 QFRSGKKYIVASCVVNSSPWFSK*SIFV-KIWMHFLGCTGVEL 156
           +F+S KK+ ++S +    PW+ K  +F+ KI      CTG E+
Sbjct: 65  RFKSDKKFNISSKIDIVRPWYIKNELFLPKIRDFMRYCTGPEM 107


>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 176  RENASIF*RK--YSIY*TKAKN*PRRRLRYIFCHYETV 283
            + N +IF +K  Y+ + TKAK  P R LRY+   Y+T+
Sbjct: 1133 QRNTTIFHKKNSYTFWMTKAK--PHRPLRYVMHGYDTL 1168


>SB_40154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = +3

Query: 150 IFQLYTRASEKMHPYFDENTLFTKPRRRINHAGGYDIFFATTKLFQSKDVVLRRLVYLCI 329
           +F+   +   K    FD+ T  T P+ R+   G +        LF SK   L+    + I
Sbjct: 41  LFEKIQKKCRKTPLVFDQRTYTTSPQGRVRRHGHFSANEKIHTLFGSKTAFLKNKC-VTI 99

Query: 330 KELSPMAQDVIIVTSS 377
           +E S   +D  +   S
Sbjct: 100 RETSSSRRDYDVTIQS 115


>SB_11945| Best HMM Match : EURL (HMM E-Value=9.7)
          Length = 323

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 40  NKILKEQSIMKARRDGKEEDSNVFQNLDKTTLLQEARYF--NSTPVHPRKCIH-ILTKIL 210
           NK+LK+ +  KA+   K     +F  L  ++  QEAR    +  P  P++     L+ ++
Sbjct: 230 NKLLKKNTFNKAKDRIKSRKEEIFGILSDSSKDQEARQVIEDILPASPKEGKRSFLSSVV 289

Query: 211 YLLNQGEE 234
              NQ EE
Sbjct: 290 KSFNQSEE 297


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 250 PPAWL--ILRLGLVNRVFSSKYGCIFSDARV*S*NILPL 140
           PP +   +++L  VN+V   KYGC FSDA   S   +PL
Sbjct: 24  PPCYFDQVIQLKPVNQVCYGKYGC-FSDASPFSRPFVPL 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,101,306
Number of Sequences: 59808
Number of extensions: 414595
Number of successful extensions: 1051
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)