Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0169
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / ga...   118   3e-27
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    35   0.051
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    29   2.5  
At3g01810.1 68416.m00123 expressed protein                             27   7.7  
At1g07270.1 68414.m00773 cell division control protein CDC6b, pu...    27   7.7  

>At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative
           similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2
           coat protein) (Gamma-2 COP) {Homo sapiens}; contains
           Pfam profile: PF01602 Adaptin N terminal region
          Length = 886

 Score =  118 bits (284), Expect = 3e-27
 Identities = 58/85 (68%), Positives = 66/85 (77%)
 Frame = +3

Query: 255 DIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRA 434
           ++FF+ TKLFQSKD  LRR+VYL IKELSP + +VIIVTSSL KDM  K D YR  AIR 
Sbjct: 70  EVFFSVTKLFQSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKIDMYRANAIRV 129

Query: 435 LCSITDSTMLQAIERYMKQAIVDKN 509
           LC I D T+L  IERY+KQAIVDKN
Sbjct: 130 LCRIIDGTLLTQIERYLKQAIVDKN 154



 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +1

Query: 58  QSIMKARRDGKEE-DSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEE 234
           Q ++K   D  +E + + F  ++K  +LQEAR FN   V PR+C  ++TK+LYLLNQGE 
Sbjct: 3   QPLVKKDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQGES 62

Query: 235 LTTQEATIYFLPLRNCFSQR 294
            T  EAT  F  +   F  +
Sbjct: 63  FTKVEATEVFFSVTKLFQSK 82


>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 34.7 bits (76), Expect = 0.051
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +3

Query: 288 SKDVVLRRLVYLCIKELSPMAQDVIIVTSS-LTKDMTGKDDEYRPAAIRALCSITDSTML 464
           + D+VL+++ YL +   +    D+ ++T + L +D   +D   R  A+R+LCS+    ++
Sbjct: 74  TSDIVLKKMCYLYVGNYAKGNPDLSLLTINFLQRDCKDEDPMIRGLALRSLCSLRVPNLV 133

Query: 465 QAIERYMKQAIVDKN 509
           + +   +   + D N
Sbjct: 134 EYLVGPLGSGLKDNN 148


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 234 INHAGGYDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVII-VTSSLTKDMTGKDDE 410
           + H   +   +A  K+    +++L+R  YL +        D+II + +++ KD+   +  
Sbjct: 79  LGHDASFGYIYAV-KMTHDDNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLRSDNYL 137

Query: 411 YRPAAIRALCSITDSTMLQAI 473
              AA+ A+C + +   + A+
Sbjct: 138 VVCAALNAICRLINEETIPAV 158


>At3g01810.1 68416.m00123 expressed protein
          Length = 921

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -2

Query: 621 HDLKSWPPCASFIQRRTK--SGTVADRCKAETSAADPTAGS 505
           HD+K WPP  S    R+        DR    TS   P+ GS
Sbjct: 24  HDIKPWPPSQSLRSLRSVVIQWENGDRNSGTTSVVAPSLGS 64


>At1g07270.1 68414.m00773 cell division control protein CDC6b,
           putative (CDC6b) identical to CDC6b protein
           (GI:18056482) {Arabidopsis thaliana}; contains Prosite
           PS00017: ATP/GTP-binding site motif A (P-loop);
           identical to cDNA CDC6b GI:18056481
          Length = 505

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 28  FLNYNKILKEQSIMK---ARRDGKEEDSNVFQNLDKTTLLQEARYFNS 162
           F N   +L +Q I+K   ARRD  +  S      D T  LQE R+F +
Sbjct: 455 FTNMCTVLNDQGILKVGQARRDKLKRVSLRVDESDITFALQEIRFFRN 502


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,803,674
Number of Sequences: 28952
Number of extensions: 278038
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)