Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0168
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 31 0.12
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 29 0.48
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 29 0.64
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.84
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.84
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.84
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 28 1.1
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 1.1
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 3.4
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 27 3.4
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 27 3.4
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 27 3.4
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|... 27 3.4
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ... 26 4.5
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 5.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 5.9
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 7.8
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 7.8
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 25 7.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 7.8
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 7.8
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 25 7.8
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 7.8
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 31.5 bits (68), Expect = 0.12
Identities = 24/70 (34%), Positives = 35/70 (50%)
Frame = +3
Query: 48 EMVAGARTVAAGLEALRAEHTQLLAGLATNTEHENEKASLVKKSIEAIDLGLGEAQVMTA 227
EM A +GL A Q A LA N E +K +L ++ I+A++ LGE + +
Sbjct: 403 EMYAVGDCAFSGLPATAQVANQQGAWLAKNLNVEGKKFALHER-IQALEKQLGEKEAPSQ 461
Query: 228 LASHLQSVEQ 257
+A Q VEQ
Sbjct: 462 VAGLKQQVEQ 471
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 362 RVAQLEEENKHLEFMASIRKYDSDINEESDSNRTGQGEKKREDPMVELFLTMTTDDNRNN 541
R ++ +EN E + I+ S +EE + T GEK+ ++ +E + T+ N N+
Sbjct: 67 RAVEIADENACEEPVLKIKSVSSTESEEEKESSTEIGEKQEKETHLEPKTPVQTNTNNNH 126
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 544 IDVARRPPMHFAQQVNAGYRDPRPACARFTT 636
IDV P F + G+ DPRP C +FTT
Sbjct: 111 IDVVELP---FTKGGYGGFYDPRPGCLKFTT 138
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 28.7 bits (61), Expect = 0.84
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 263 QKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKYDSDINE 442
+KL+ +RLCQ+NA LR A ++ +SE V Q+ ++ + + I+ S
Sbjct: 3904 EKLQNSWKRLCQKNAILRTHFAISE---DSSEPMVIQIVDKFEARSCLNQIKILPSRFTN 3960
Query: 443 ESDSNR 460
D+ R
Sbjct: 3961 IEDTLR 3966
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.7 bits (61), Expect = 0.84
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 263 QKLRTQVRRLCQENAWLRDELAAAQQHLQA----SEQRVAQLEEENKHL 397
+K ++ L Q L+DE+A++ + SE RVA L EENKHL
Sbjct: 975 EKNHLKITSLEQRIVILQDEIASSSLRCENITKDSETRVALLLEENKHL 1023
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 0.84
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +2
Query: 248 RRAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVA----QLEEENKHLEFMASI 415
R E ++L ++ +L +ENA ++DEL A ++ + A L+E++ LE + +
Sbjct: 1093 RNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDDLKEKSDALEQLTNE 1152
Query: 416 RKYDSDINEESDSNRTGQGEKKRE 487
+ E+S+SN E++ +
Sbjct: 1153 KNELIVSLEQSNSNNEALVEERSD 1176
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 28.3 bits (60), Expect = 1.1
Identities = 26/119 (21%), Positives = 52/119 (43%)
Frame = +2
Query: 203 GRSSGNDGSGISPSVRRAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEE 382
G S S +SP+ + ++ + + Q + + E AAA SE++ +
Sbjct: 26 GTSPATASSVVSPNEPKLSGKEAKALKKARKQASRRAKAEAAAANNPPGVSEEKKVAIPN 85
Query: 383 ENKHLEFMASIRKYDSDINEESDSNRTGQGEKKREDPMVELFLTMTTDDNRNNKSMSPD 559
+N + + AS K + + E+D+N Q +K E+ V +F + R +++ D
Sbjct: 86 KNSNQQKKAS--KQNPQNSPETDANL--QEKKIFEEKQVSIFSHLDWRRRRTTENIPKD 140
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +2
Query: 257 EKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHL--EFMASI-RKYD 427
+KQ +Q + + W+R++L +++ ++++ L+ E + E A + RK +
Sbjct: 377 DKQSRTSQFTTKKERDEWIRNQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSRKKE 436
Query: 428 SDINEESDSNRTGQ 469
+I+ ES +R Q
Sbjct: 437 IEISLESQGDRMSQ 450
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 320 ELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKYDSD 433
ELAAA+Q LQ QLEE K + + K +++
Sbjct: 201 ELAAAEQQLQELSVHNQQLEESIKQVSSSIELEKINAE 238
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 621 RTLHNLVIQDPVARPG-TRVPVAPF 692
RT + ++DPVARPG T VP +PF
Sbjct: 230 RTCSFVYVRDPVARPGLTEVP-SPF 253
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 377 EEENKHLEFMASIRKYDSDINEESDS 454
E + KHL F A +RK +S++N+ + S
Sbjct: 166 ENKIKHLSFHAYLRKINSNVNKYASS 191
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 212 SGNDGSGISPSVRRAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEE 382
S ND ++ S R + +LR+ Q +A + + + + EQR+A LEE
Sbjct: 145 SYNDEKSVNASALRTTEDRLRSMEMAYAQLSAKVIPSPSKRPANYKFYEQRIAMLEE 201
>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 290 LCQENAWLRDELAAA-QQHLQASEQRVAQLEEENKHLE 400
L E W+R++ A +QHL + + E ENK +E
Sbjct: 130 LSDEPLWIREDAREAMKQHLDPRQDEAFRKELENKKIE 167
>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
Arc34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 544 IDVARRPPMHFAQQVNAGYRDP 609
+D RRP + A QV YRDP
Sbjct: 201 VDARRRPAIQTAPQVLFSYRDP 222
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 299 ENAWLRDELAAAQQHLQASEQRVAQLEEENK 391
EN +++ELA + LQ +R+A++ +E+K
Sbjct: 995 ENQRMKEELAGPLKILQEMARRIAKVSKESK 1025
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 211 ASPNPRSIASMLFLTREAFSFSCSVLVARPASSCVCSALRASSPAATVRAPATISSCV 38
A PN A+ + T + +V ++PA S V SA ASSP+ + A +++ V
Sbjct: 1033 ARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSA--ASSPSNISKPSAPVANNV 1088
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 275 TQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKYDSDINEESD 451
T+V+ L +ENA L+D+ + L + + ++ E E E A + + +I E D
Sbjct: 1025 TKVQELREENASLKDQCRTYESQLASLVSKYSETESELNKKE--AELVIFQKEITEYRD 1081
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 524 RWSSSGTARPSG-PRVSSRPDLYGYCPTLRLC 432
RW S+ S P S+RP Y + P L LC
Sbjct: 197 RWQSNDPHLISSVPDYSARPRKYAHVPILNLC 228
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 7.8
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 12/140 (8%)
Frame = +2
Query: 263 QKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEE------------ENKHLEFM 406
+K+ +++L EN+ + +A +Q ++ + + LEE EN+H
Sbjct: 494 EKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRSLEEESIKESSATQQNENQHKRSS 553
Query: 407 ASIRKYDSDINEESDSNRTGQGEKKREDPMVELFLTMTTDDNRNNKSMSPDARRCTSPSK 586
+ D +E+ + T K++ P L +DD N S SP ++ SP K
Sbjct: 554 RKLLYEDKQAIQEAHTINT----KRKLWPQSTLIQAPNSDDEENVPSPSP-KKKVVSPIK 608
Query: 587 *TPGTEIPGPPAHASQPGHT 646
P + PP + G T
Sbjct: 609 --PLSPSRRPPLTSLYSGTT 626
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 305 AWLRDELAAAQQHLQASEQRVAQL-EEENKHLEFMASIRKYDSDINEESDSNRTGQGEKK 481
A+LR+ + +QQ + + +EN ++ A R D D+ + +++ G K
Sbjct: 12 AYLREAIKVSQQARDEGQHPFGCIIVDENDNVIMSAGNRVPDGDVTQHAETRAVGLITKT 71
Query: 482 RED 490
R D
Sbjct: 72 RRD 74
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +2
Query: 257 EKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMAS 412
E+ L ++++ L +N LR ++ +++ + +++EE HL +AS
Sbjct: 436 ERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLAS 487
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 178 ASKLSILDWEKLR**RLWHLTFSPSSREAKT 270
+SKLSILDWE L+ F+P + AKT
Sbjct: 82 SSKLSILDWEALQ--------FTPKAYTAKT 104
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +2
Query: 305 AWLRDELAAAQQHLQASEQRVAQLEEENK--HLEFMASIRKYDSDINEESDSNRTGQGEK 478
AW++ + L+ ++R+++LEE+ + F D D+N DS+ + E
Sbjct: 201 AWMKLLDTKGSEELKKEQKRISELEEKERIQKKAFEDKGLVSDQDVNHSIDSDDQSEHE- 259
Query: 479 KREDPMVELFLTMTTDDNRN 538
+ E P+ T RN
Sbjct: 260 QAETPIPSSKNKRKTRSQRN 279
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = -3
Query: 383 PPPAVLRVVRKPAGAAELQPARPSARRSLGTACGPACGVFASLLDGLKVRCQSRHYLSFS 204
PP L V+ G L +++ + GT+C + V ++L GL + +++ +S++
Sbjct: 199 PPTWYLYVLCTSEGEVLLPQKWLASKTARGTSCALSSAVASNLAIGLDLVTATQNAVSYT 258
Query: 203 QSKID 189
Q ++
Sbjct: 259 QRALE 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,157
Number of Sequences: 5004
Number of extensions: 55487
Number of successful extensions: 241
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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