Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0168
         (697 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    29   0.18 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    28   0.32 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   3.0  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   3.0  
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    24   5.3  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    23   7.0  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   9.2  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   9.2  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           23   9.2  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   9.2  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 28.7 bits (61), Expect = 0.18
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 593 PGTEIPGPPAHASQPGHTGPRRKARYQGPRG 685
           PG  + GPP     PG  GP+ +    G RG
Sbjct: 98  PGLSMVGPPGPKGNPGLRGPKGERGGMGDRG 128



 Score = 27.9 bits (59), Expect = 0.32
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 605 IPGPPAHASQPGHTGPRRKARYQGPRG 685
           IPGPP     PG  GP     Y G +G
Sbjct: 398 IPGPPCVDGLPGAAGPVGPRGYDGEKG 424



 Score = 25.4 bits (53), Expect = 1.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 608 PGPPAHASQPGHTGPRRKARYQGPRG 685
           PGPP +   PG  GP+ +   +GP G
Sbjct: 148 PGPPGY---PGDVGPKGEPGPKGPAG 170



 Score = 25.0 bits (52), Expect = 2.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 605 IPGPPAHASQPGHTGPRRKARYQGPRGP 688
           + G P  +  PG +G +    Y GP GP
Sbjct: 276 LAGLPGPSCLPGMSGEKGDKGYTGPEGP 303



 Score = 23.4 bits (48), Expect = 7.0
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 608 PGPPAHASQPGHTGPRRKARYQGPRGP 688
           PG P      G TG R +    GP GP
Sbjct: 47  PGAPGPVGPRGLTGHRGEKGNSGPVGP 73


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 0.32
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 593 PGTEIPG--PPAHASQPGHTGPRRKARYQGPRGP 688
           PG   P   P     +PG  GP+    Y+GP+GP
Sbjct: 394 PGIAGPAGAPGGGEGRPGAPGPKGPRGYEGPQGP 427



 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 596 GTEIPGPPAHASQPGHTGPRRKARYQGPRGP 688
           G  +PG P     PG  G + ++   G  GP
Sbjct: 448 GQGVPGRPGPEGMPGDKGDKGESGSVGMPGP 478


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 602 EIPGPPAHASQPGH 643
           ++PGP + A +PGH
Sbjct: 11  DVPGPESSAGEPGH 24


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 311  LRDELAAAQQHLQASEQRVAQLEEE-NKHLEFMASIRKYDSDINEESDS 454
            + DE+ AAQ  ++       QLEEE NK  E +  ++      +E S S
Sbjct: 940  MEDEVEAAQSAIRKGNDERTQLEEEANKLREELEEMKLAIEKAHEGSSS 988


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 353 KPAGAAELQPARPSARRSLGT 291
           +P   AE +PA+ S RR +GT
Sbjct: 66  EPISDAEEEPAKGSKRRKVGT 86


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 610 RPACARFTTWSYRTPSQGPVPGSPWPL 690
           +P+ A FT  + RTP+  P+P +  P+
Sbjct: 789 QPSNAPFTPPTDRTPTPPPLPATAEPM 815


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +3

Query: 3   KIIESLGRMTAMTQEEMVAGARTVAAGLEALRAEHTQLLAGLATNTEHENEKASLVKKSI 182
           K IES        QE+++   +T   GLE    E  ++ A L+ +     E+   ++  +
Sbjct: 432 KKIESEKNEALKRQEKLIDHIKTSRLGLE----EQKRIKAELSQDVGTSKERIHELQSEL 487

Query: 183 EAIDLGLGEAQV 218
           + +   LG+A++
Sbjct: 488 DNVREQLGDAKI 499


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 203 GRSSGNDGSGISPSVRRAEKQKLR 274
           G    ++G+G SPS RR    + R
Sbjct: 11  GEKEDSEGTGTSPSYRRLPNDETR 34


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 578  AKCIGGRRATSIYYSCCRRWSSSGTARPSGPRVSS 474
            + C+  R A +IY +    +++ G     GP V+S
Sbjct: 1212 SNCLNKRSAINIYATAGNDYNTPGRPSTLGPSVAS 1246


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +2

Query: 620 AHAS----QPGHTGPRRKARYQGPRGPFCK 697
           AHAS     P    PRR++   G R P C+
Sbjct: 243 AHASIRKIPPSRRNPRRRSPRSGGRWPSCR 272


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,903
Number of Sequences: 2352
Number of extensions: 16375
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)