Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0168
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.91 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 221 DGSGISPSVRRAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEE 385
           DG    P V      ++ TQ   +  +    + +  A QQHLQA EQ +   +++
Sbjct: 156 DGPDSPPLVESQMHHQMHTQHPHMQPQQG--QHQSQAQQQHLQAHEQHMMYQQQQ 208


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 577 AQQVNAGYRDPRPACARFTTWSYR----TPSQGPVPGSP 681
           +QQ ++G   P+P+  +      R     PSQGP PG P
Sbjct: 13  SQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +2

Query: 296 QENAWLRDELAAA---QQHLQASEQRVAQLEEENKHLEFMA---SIRKYDSDINEESDSN 457
           Q N+W + ++  A   QQ +QA+   V Q ++ ++H   M        +   IN    S 
Sbjct: 763 QGNSWSQQQVQQAQQVQQQMQAAMAAVQQSQQRHQHAAQMIYGHQQSHHGLHINSSPSSV 822

Query: 458 RTGQGEK 478
           ++GQ ++
Sbjct: 823 QSGQQQQ 829


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 165 LVKKSIEAIDLGLGEAQVMTALASHL 242
           ++  S+ A + GLG +  +TAL+S L
Sbjct: 597 VIASSVSAGEEGLGNSLAITALSSIL 622


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 539 NKSMSPDARRCTSPSK*TPGTEIPGPPAHASQP 637
           N S SP+ R  ++PS  T  +      A A QP
Sbjct: 508 NSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQP 540


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 610 RPACARFTTWSYRTPSQGPVPGSP 681
           RP+    T  +  TP  G +P SP
Sbjct: 222 RPSYTTATMATTSTPGSGSLPASP 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,718
Number of Sequences: 438
Number of extensions: 4636
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)