Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0167
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    55   1e-06
UniRef50_UPI000023CBA3 Cluster: hypothetical protein FG04523.1; ...    35   1.7  
UniRef50_Q6YQC2 Cluster: Superfamily II DNA and RNA helicase; n=...    35   2.3  
UniRef50_A2DY07 Cluster: Adenylate and Guanylate cyclase catalyt...    33   9.1  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 55.2 bits (127), Expect = 1e-06
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = +2

Query: 494 SIDK*RPKLLYKINLKQKKGIRPTGDTSKGKQNLFLFNSEHFHIYL 631
           SI+K RPK LYKINLKQ KGIR TGDTSK KQN + +      I++
Sbjct: 33  SINK-RPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYLIPRIFIFI 77



 Score = 36.7 bits (81), Expect = 0.56
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +3

Query: 453 FIRVLTDPADFVVPQSINKDLSFCIK*T*NKKKESVQRGTHQRENK 590
           F+ +L DPADFVVPQSINK      K    + K   Q G   +E +
Sbjct: 18  FMIILADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQ 63


>UniRef50_UPI000023CBA3 Cluster: hypothetical protein FG04523.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG04523.1 - Gibberella zeae PH-1
          Length = 2088

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -3

Query: 286 INIITIQYDCVSLLFFLKTVTE-QEKPYLCAGTYSPKGLFQLLAKIYFKGNLN-DTFYST 113
           + + T+  D    +FFL +++E Q   Y C    S  GLF L  K+Y+  N N D  +ST
Sbjct: 251 LRVPTMSNDSFRWMFFLSSLSETQIDHYTC--DVSSDGLFDLRGKVYYSCNKNHDKVFST 308

Query: 112 EN 107
           E+
Sbjct: 309 ES 310


>UniRef50_Q6YQC2 Cluster: Superfamily II DNA and RNA helicase; n=2;
           Candidatus Phytoplasma asteris|Rep: Superfamily II DNA
           and RNA helicase - Onion yellows phytoplasma
          Length = 357

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -3

Query: 250 LLFFLKTVTEQEKPYLCAGTYSPKGLFQLLAKIYFKGNLNDTFY---STENFLLQVTSLT 80
           +L F  T+TEQ KP++    Y  K  F     +Y + NLN TFY   +T + +  +  LT
Sbjct: 168 ILLFSATITEQLKPFI--NRYFGKSTF---IDVYKQSNLNRTFYVLETTTSRMQTLIHLT 222

Query: 79  TTKNLLVLLIYV 44
              N  + L++V
Sbjct: 223 KVLNPYLALVFV 234


>UniRef50_A2DY07 Cluster: Adenylate and Guanylate cyclase catalytic
            domain containing protein; n=1; Trichomonas vaginalis
            G3|Rep: Adenylate and Guanylate cyclase catalytic domain
            containing protein - Trichomonas vaginalis G3
          Length = 1588

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 24/88 (27%), Positives = 41/88 (46%)
 Frame = -2

Query: 674  GLELFVEVQRRFKR*DKYENARN*IKISFVFPLMCPPLDGFLFFVLSLFYTKA*VFIYRL 495
            GL+LF E +  ++  D  EN+     +   FPL    +D FLF + +  Y      I ++
Sbjct: 842  GLDLFNENELNYENEDTLENSHKIEIMELCFPLALFAVDFFLFIIPTTCYYFNLKRILKV 901

Query: 494  RHYEVCRVS*YSNKSLKKTNNEVPGTVQ 411
                  ++   S K++ K+NN+    VQ
Sbjct: 902  LQSIQPKIKEESCKTIGKSNNDDQSAVQ 929


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,464,139
Number of Sequences: 1657284
Number of extensions: 10438940
Number of successful extensions: 20115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20110
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)