Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0167
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.0  
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   8.0  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    25   8.0  

>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 600 KNKFCFPFDVSPVGRIPFFCFKFILYKSLGLYLSIEALRSLPGQLVL 460
           KN+F F   ++ + RI   C K +   SL L  +   + + P +LV+
Sbjct: 134 KNRFFFMSSINALIRISRNCIKLLFKNSLVLLAACYFMNTTPSRLVI 180


>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 473 PGRLRSASIDK*RPKLLYKINLKQKKGIRPTGDTSKGKQN 592
           P R  ++SI K RPKL   INL     I  T + S  +Q+
Sbjct: 71  PSRTHTSSIKKKRPKLCSNINLTPWSLIDSTSNKSIREQS 110


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 169 GITP*ANRYPRIGKVFLVLSLFSRKK 246
           GITP  NRY  IG + +VLS+   K+
Sbjct: 200 GITP-VNRYTTIGPMLIVLSVSGIKE 224


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 639 QKVR*I*KCSELNKNKFCFPF-DVSPVGRIPF 547
           Q V  I KC   N++K CF F D   +G+I F
Sbjct: 175 QNVVRIAKCITANQSKACFGFTDSDSIGKIHF 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,920
Number of Sequences: 5004
Number of extensions: 48385
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)