Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0167
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    24   1.6  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    24   1.6  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    24   1.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.6  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 560 PTGDTS-KGKQNLFLFNSEHFHIY 628
           PTG    +GKQN    NSE+F I+
Sbjct: 31  PTGHQEMQGKQNSASLNSENFGIF 54


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 560 PTGDTS-KGKQNLFLFNSEHFHIY 628
           PTG    +GKQN    NSE+F I+
Sbjct: 31  PTGHQEMQGKQNSASLNSENFGIF 54


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 560 PTGDTS-KGKQNLFLFNSEHFHIY 628
           PTG    +GKQN    NSE+F I+
Sbjct: 31  PTGHQEMQGKQNSASLNSENFGIF 54


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 255 TQSYCIVIMLMFYY 296
           T SYCI ++L+ YY
Sbjct: 217 TFSYCIPMILIIYY 230


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 464 YSNKSLKKTNNEVPGTVQSSVQSNYRHD 381
           +S+KS  + NN+       S +SN RH+
Sbjct: 434 HSSKSDNQNNNQHNDQAHHSSKSNNRHN 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,235
Number of Sequences: 438
Number of extensions: 3502
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)