Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0163
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CCL2 Cluster: FK506-binding protein FKBP59 homologue;...    35   2.3  
UniRef50_Q1JSN2 Cluster: DNA helicase, putative; n=1; Toxoplasma...    35   2.3  
UniRef50_A4QPR1 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_A4XLD9 Cluster: MiaB-like tRNA modifying enzyme YliG; n...    33   7.1  
UniRef50_Q4SUN2 Cluster: Chromosome undetermined SCAF13860, whol...    33   9.4  
UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  

>UniRef50_Q5CCL2 Cluster: FK506-binding protein FKBP59 homologue;
           n=1; Bombyx mori|Rep: FK506-binding protein FKBP59
           homologue - Bombyx mori (Silk moth)
          Length = 451

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 50  FYFKLADPADFVVP 9
           FYFKLADPADFVVP
Sbjct: 438 FYFKLADPADFVVP 451


>UniRef50_Q1JSN2 Cluster: DNA helicase, putative; n=1; Toxoplasma
           gondii|Rep: DNA helicase, putative - Toxoplasma gondii
          Length = 888

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 405 CSRAAKFQLHNYIVASVCDCDWKYVHTYVTL 497
           C+    + +H+Y++A +C C   YVHT+V +
Sbjct: 4   CAYQYTYCMHSYVIAYMCTCKHTYVHTFVNV 34


>UniRef50_A4QPR1 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 1028

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -1

Query: 338 VKTVRRDKEFVTS*GPNSRGLITLLYDKLLGRSKFLHVRSS*SPAETNKITSASQHIQG 162
           +K  R+D  +    GP +  L++   D ++GRS  +  R+S S A  ++  S S+ IQG
Sbjct: 655 IKVFRQDCAYRRREGPETASLLSRKRDSIVGRSASILTRTSASSAARSRKGSLSRSIQG 713


>UniRef50_A4XLD9 Cluster: MiaB-like tRNA modifying enzyme YliG; n=2;
           Clostridia|Rep: MiaB-like tRNA modifying enzyme YliG -
           Caldicellulosiruptor saccharolyticus (strain ATCC 43494
           / DSM 8903)
          Length = 440

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 229 TFVQVEALPRLIKSPLHHSTYKAIEGFNSR*SY 131
           TFV   ++PRLI +P  ++  K  EG N+R SY
Sbjct: 130 TFVYTSSMPRLIATPKFYAYIKIAEGCNNRCSY 162


>UniRef50_Q4SUN2 Cluster: Chromosome undetermined SCAF13860, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF13860,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 577

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 507 HKLKESHMYVHISSHSHTQKLQCNCVTETL 418
           H    +H + H  +H+HTQ+LQC  V   L
Sbjct: 521 HTHTHTHTHTHTHTHTHTQRLQCAAVISDL 550


>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
          Bombyx mori|Rep: Putative uncharacterized protein -
          Bombyx mori (Silk moth)
          Length = 77

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = -1

Query: 56 ILFYFKLADPADFVVPQS 3
          ILF   LADPADFVVPQS
Sbjct: 16 ILFMIILADPADFVVPQS 33


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,529,543
Number of Sequences: 1657284
Number of extensions: 11824750
Number of successful extensions: 20881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20848
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)