Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0163
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   3.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   3.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   3.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.4  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 510 IHKLKESHMYVHISSHSHTQKLQCNCVTETLQRDCN 403
           IH +  S MY H++  S T        T T+Q   N
Sbjct: 236 IHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSN 271


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 510 IHKLKESHMYVHISSHSHTQKLQCNCVTETLQRDCN 403
           IH +  S MY H++  S T        T T+Q   N
Sbjct: 184 IHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSN 219


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 510 IHKLKESHMYVHISSHSHTQKLQCNCVTETLQRDCN 403
           IH +  S MY H++  S T        T T+Q   N
Sbjct: 367 IHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSN 402


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 322 EIKNLLQVEGQTLGG*LHCYMTNF 251
           + ++LL+ E +  G  + CYMTN+
Sbjct: 623 QYEDLLEYEAKEEGPKVVCYMTNW 646


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,222
Number of Sequences: 336
Number of extensions: 3427
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)