Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0163
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    31   0.22 
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    28   1.5  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   3.6  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.2  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.2  

>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 247 PKSLSYNNVISPREFGPQLVTNSLSRLTV 333
           P+  ++N++ S    GPQ+ T SLS +TV
Sbjct: 368 PEDTAHNSLTSQENVGPQVTTTSLSNMTV 396


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 384 EVYVLVNCSRAAKFQLHNYIVASVCDCD-WKYVHTYVTLLIYVLFKL*FTV 533
           +VYV +  +R+ +F  HN    +  D D  KY + Y+ L+   +F L  T+
Sbjct: 131 KVYVDMRLARSKRFSAHNIAKEANTDIDRIKYWNPYICLIKPSIFDLAITI 181


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -1

Query: 296  GPNSRGLITLLYDKLLGRSKFLHVRSS*SPAETNKITSASQHIQGYRG 153
            GPN  G IT L    LG+ K L   SS S  +T    + S  I    G
Sbjct: 1114 GPNVMGTITALKLCSLGKGKSLSFVSSTSTVDTEYYVNLSNEITSKGG 1161


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 629 LISFYWIFYPTLYLSG*LYQPY 694
           L SFYW+F   L L G L Q Y
Sbjct: 177 LKSFYWVFGKALALYGHLSQKY 198


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +3

Query: 381 LEVYVLVNCSRAAKFQLHNYIVASVCDCDWKYVHTYVTLLIYVLFKL*FTVIYNEYT 551
           + V  L +C+    F + +   A + D   +++  +VTLLI+ +F++     +N +T
Sbjct: 141 IPVSTLGSCTFLVGFGVGSLPFAPLSDIYGRFIIYFVTLLIFTIFQVGGGCAHNVWT 197


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 235 NLDRPKSLSYNNVISPREFGPQLVTNSLSRLTVFTYDN*IPEFNES 372
           NL   K+L Y N ISP +    ++ +   R  + TYD  I + N+S
Sbjct: 188 NLTEAKTLLYQNPISPED----VLLHFWDRNLMSTYDLKIQDINDS 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,516
Number of Sequences: 5004
Number of extensions: 55050
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)