Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0163
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790...    29   4.9  
01_04_0072 - 15721866-15723563                                         29   4.9  
01_04_0070 - 15704794-15706491                                         29   4.9  

>01_07_0016 -
           40476014-40476333,40476598-40476740,40476945-40479099,
           40479205-40480047,40480176-40480269,40480356-40481207,
           40481367-40481437,40481750-40481821,40481977-40482019
          Length = 1530

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 281 PESLALNL*QILYLVLPFSLTTIKFRNLMNQRNPRSLCTR 400
           PES++L+  +ILY   P S T    R+L N R+   L +R
Sbjct: 650 PESVSLDAEEILYTARPNSSTGQSLRDLENDRSDFQLGSR 689


>01_04_0072 - 15721866-15723563
          Length = 565

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 268 CYMTNFWVGPSFFTFVQVEALPRLIKSPLHHSTYKAIEGFNSR*SYRVRTREINCRNFNI 89
           CY +N+W+  S  TF+ V  +   I   ++++  K   G   R   ++  +E N  NF I
Sbjct: 342 CYTSNWWLTVSLVTFLTVFCIFFAITDTIYYNG-KVYYGVAMRGGLKIFNKEDNDPNFYI 400


>01_04_0070 - 15704794-15706491
          Length = 565

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 268 CYMTNFWVGPSFFTFVQVEALPRLIKSPLHHSTYKAIEGFNSR*SYRVRTREINCRNFNI 89
           CY +N+W+  S  TF+ V  +   I   ++++  K   G   R   ++  +E N  NF I
Sbjct: 342 CYTSNWWLTVSLVTFLTVFCIFFAITDTIYYNG-KVYYGVAMRGGLKIFNKEDNDPNFYI 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,036,929
Number of Sequences: 37544
Number of extensions: 290066
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)