Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0163
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical ...    31   0.83 
AF016442-8|AAB65916.1|  881|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical
           protein Y49F6A.1 protein.
          Length = 966

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 345 VVSENGKTR*RICYKLRAKLSGANYIV-I*QTFG-SVQVSSRSFKLKPCRD 199
           ++S NG+T   +  KL  K  G NYIV + Q+F  +V  S+ SF  K   D
Sbjct: 624 IISGNGQTAGNVIKKLNLKCGGINYIVEVPQSFNRTVVCSNNSFVQKKLFD 674


>AF016442-8|AAB65916.1|  881|Caenorhabditis elegans Hypothetical
           protein K12B6.1 protein.
          Length = 881

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 366 IKFRNLIVVSENGKTR*RICYKLRAKLSGANY 271
           I+F   + +++   TR  I YK   KL G NY
Sbjct: 578 IRFETAVKLAQQQNTRKNIIYKTNMKLGGLNY 609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,846
Number of Sequences: 27780
Number of extensions: 301524
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)