Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0163
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01350.1 68417.m00175 DC1 domain-containing protein contains ...    32   0.33 
At1g13230.1 68414.m01535 leucine-rich repeat family protein cont...    27   9.5  

>At4g01350.1 68417.m00175 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +2

Query: 347 IKFRNLMNQRNPRSLCTR*LQSRCKVSV 430
           +KF  + N RN R LC +  QSRCKVSV
Sbjct: 600 VKFGAVPNNRNTRPLCIQ-CQSRCKVSV 626


>At1g13230.1 68414.m01535 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to gb|U42445
           Cf-2.2 from Lycopersicon pimpinellifolium
          Length = 424

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 704 ISNGRVGIISLTGTAWGKKSNKMKLMTQGM*FYNEIFNSI 585
           +SN  +G   + GT WGK SN + L    M    EI  S+
Sbjct: 294 LSNNPMGEEDMVGTNWGKMSNLVVLDLSKMGLRGEIPTSL 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,582
Number of Sequences: 28952
Number of extensions: 261939
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)