Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0162
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    73   3e-14
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    26   2.9  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   3.8  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   6.7  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.7  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 36/84 (42%), Positives = 51/84 (60%)
 Frame = +3

Query: 237 QKTAVILKKLLVNTIPGIEEVNMIKEDGTVIHFNNPKAQAWLAANTFAITGHGENKQTTK 416
           +K    LKKL +  + GI+EVNM KEDG VI+F  P   + L   T AI G  E K  ++
Sbjct: 39  KKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSE 98

Query: 417 MLPGILSQFGPDGLNRLKRIASSV 488
           +LPGIL+  GP+ L  L+++A  +
Sbjct: 99  ILPGILNNLGPESLTALRQMAEQL 122



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +1

Query: 130 MNSEKLKKLHSQVRIGGKGTPRRKKKVVHVTA--ATDDKKLQ 249
           M+  KL KL +  RIGGKGTPRRK K    +A  A DDKK+Q
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQ 42


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 509 LEWLRRGNTRRNPFQSVQAVGSELAEDT 426
           ++WL  GN+ R PF       SE  E+T
Sbjct: 127 VDWLGMGNSSRPPFDIKGQTASEKVEET 154


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 339 NPKAQAWLAANTFAITGHGENKQTTKMLPGILSQFG 446
           +PK  AW    TF +  +        ++ GIL  FG
Sbjct: 274 HPKQSAWSKVETFGVAPNPRAGHAASVVEGILYVFG 309


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 358 HACAFGLLKCITVPSSLIIFTSSMPGIVFTNNFLRMTAVFCHLWPQ*REQPSSCVSVCPY 179
           H C    L  ++  ++L I+ +  PG +     +   A+     P   EQP+ CV+ CP 
Sbjct: 124 HGCK---LAAVSADATLRIYEAMEPGNLTYWTLMNEIALMPSP-PSRNEQPAFCVNWCPS 179

Query: 178 R 176
           R
Sbjct: 180 R 180


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 155 SFFNFSLFIVLFLSVNCV 102
           +FF FSL IV F+S N +
Sbjct: 452 AFFGFSLLIVFFVSYNYI 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,608
Number of Sequences: 5004
Number of extensions: 44696
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)