Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0162
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 84 6e-17
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 82 2e-16
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 50 8e-07
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 31 0.55
10_02_0076 - 4976601-4976837,4976856-4976900,4976945-4977070,497... 30 0.96
08_02_1200 + 25234208-25234370,25238527-25238819,25240003-252402... 28 3.9
08_02_1199 - 25209454-25210896,25211005-25211519,25211751-252119... 28 3.9
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 28 3.9
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 27 6.8
05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790 27 6.8
12_01_0002 - 4477-6144,6571-7440 27 8.9
11_01_0003 - 6099-7766,8193-9062 27 8.9
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 84.2 bits (199), Expect = 6e-17
Identities = 40/83 (48%), Positives = 56/83 (67%)
Frame = +3
Query: 255 LKKLLVNTIPGIEEVNMIKEDGTVIHFNNPKAQAWLAANTFAITGHGENKQTTKMLPGIL 434
LK++ VNTIPGIEEVN+ K+D VI F NPK QA + ANT+ ++G + K+ +LP I+
Sbjct: 44 LKRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSII 102
Query: 435 SQFGPDGLNRLKRIASSVAAPKP 503
+Q GPD L+ L+R+A P
Sbjct: 103 NQLGPDNLDNLRRLAEQFQKQAP 125
Score = 57.2 bits (132), Expect = 7e-09
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = +1
Query: 130 MNSEKLKKLHSQVRIGGKGTPRRKKKVVHVTAATDDKKLQ 249
MN +KLKK+ VR GGKG+ RRKKK VH T TDDK+LQ
Sbjct: 2 MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQ 41
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 82.2 bits (194), Expect = 2e-16
Identities = 39/83 (46%), Positives = 55/83 (66%)
Frame = +3
Query: 255 LKKLLVNTIPGIEEVNMIKEDGTVIHFNNPKAQAWLAANTFAITGHGENKQTTKMLPGIL 434
LK++ VN IPGIEEVN+ K+D VI F NPK QA + ANT+ ++G + K+ +LP I+
Sbjct: 483 LKRVGVNNIPGIEEVNIFKDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTII 541
Query: 435 SQFGPDGLNRLKRIASSVAAPKP 503
+Q GPD L+ L+R+A P
Sbjct: 542 NQLGPDNLDNLRRLAEQFQKQVP 564
Score = 57.6 bits (133), Expect = 6e-09
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +1
Query: 127 TMNSEKLKKLHSQVRIGGKGTPRRKKKVVHVTAATDDKKLQ 249
+MN +KLKK+ VR GGKG+ RRKKK VH T TDDK+LQ
Sbjct: 440 SMNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQ 480
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 50.4 bits (115), Expect = 8e-07
Identities = 33/78 (42%), Positives = 43/78 (55%)
Frame = +3
Query: 255 LKKLLVNTIPGIEEVNMIKEDGTVIHFNNPKAQAWLAANTFAITGHGENKQTTKMLPGIL 434
LK++ VNTIP IEEVN+ K+D VI F NP K+ +LPGI+
Sbjct: 35 LKRVGVNTIPAIEEVNIFKDD-LVIQFVNP-------------------KELQDVLPGII 74
Query: 435 SQFGPDGLNRLKRIASSV 488
+Q GPD + LKRIA +
Sbjct: 75 NQLGPDNMEHLKRIAEEM 92
Score = 47.2 bits (107), Expect = 8e-06
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +1
Query: 166 VRIGGKGTPRRKKKVVHVTAATDDKKLQ 249
VR GGKGT RRKKK VH T TDDK+LQ
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQ 32
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 31.1 bits (67), Expect = 0.55
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 67 NSVIKK-CPVLTLTQFTLKNSTMNSEKLKKLHS--QVRIGGKGTPRRKKKVVHVTAATDD 237
++V+++ C + + + LK + E+LKKL + R GG G P R K +H+ +A+
Sbjct: 241 DAVVQRFCQEVGVKRRVLKYGSGAPEELKKLDFFWERRGGGGGNPLRNKMKIHLASASTS 300
Query: 238 KKLQ 249
+LQ
Sbjct: 301 IRLQ 304
>10_02_0076 -
4976601-4976837,4976856-4976900,4976945-4977070,
4977179-4977397,4977416-4977529,4977562-4977858,
4980144-4980425
Length = 439
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +3
Query: 321 TVIHFNNPKAQAWLAANTFAITGHGENKQTTKMLPGILSQFGPDGLNRLKRIASSVAAP 497
TV H P + +W I G+ N+ T +LP + Q G + + ++ ++ P
Sbjct: 181 TVDHGMPPASDSWSRKRNHFIQGNKYNRVTVILLPRLTKQSGDEVKREISKVMENIIEP 239
>08_02_1200 +
25234208-25234370,25238527-25238819,25240003-25240243,
25240523-25240855,25240940-25241025,25241133-25242575
Length = 852
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 341 PEGTSVAGREHLR----DYRTRGE*ADHKDAPGYPQ 436
P+ SVAG E L+ + RT+G D KDAP +P+
Sbjct: 645 PDADSVAGDEELQAFWTEVRTKGH-GDKKDAPWWPK 679
>08_02_1199 -
25209454-25210896,25211005-25211519,25211751-25211991,
25215330-25215625,25216320-25216464
Length = 879
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 341 PEGTSVAGREHLR----DYRTRGE*ADHKDAPGYPQ 436
P+ SVAG E L+ + RT+G D KDAP +P+
Sbjct: 672 PDADSVAGDEELQAFWTEVRTKGH-GDKKDAPWWPK 706
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 28.3 bits (60), Expect = 3.9
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Frame = +2
Query: 152 NSIRKYASAVRAHRDARRR--LFTLLRPQMTKNCSHPQKVVSEHNSWHRRGKYDQRGRYC 325
+S RKY A A R ARR RP M+++ S + VS + RR + R R
Sbjct: 163 DSRRKYNDAASADRSARRSHDYDDQRRPTMSRSYSQNDRRVSSDSRLDRRRRSRSRSRSR 222
Query: 326 DTL*QPEGTSVA----GREHLRDYRTRGE*ADHKDAP 424
T G D+R G DH P
Sbjct: 223 SRSRSRSRTRTRSYNYGSRRDSDWRASGADLDHSKVP 259
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 460 FKPSGPNWLRIPGSIFVVCLFSPCPVIAKVFAAS 359
F P GP W + PGS +PCP A +F++S
Sbjct: 207 FYPLGPVW-QPPGSSTSKAPSAPCPPSASLFSSS 239
>05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790
Length = 216
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +1
Query: 64 LNSVIKKCPVLTLTQFTLKN-----STMNSEKLKKLHSQVRIGGKGTPRRKKKVVHVTAA 228
L + K V +LT ++K +T+ +EKLK + GK P +KKK +HV A
Sbjct: 140 LMKAMNKLAVASLTSTSVKEIVSSMTTVANEKLKA--EKAADAGKKKPGQKKKRLHVNKA 197
Query: 229 TDDK 240
K
Sbjct: 198 EGQK 201
>12_01_0002 - 4477-6144,6571-7440
Length = 845
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Frame = -1
Query: 382 IAKVFAASHACAFGLLKCITVPSSLIIFTSSMPGIVFTNNFLRMTAVF 239
IA+ + +G L C+ + + F + +P ++ T FL+ + +
Sbjct: 535 IARAHGTALGSVYGALACLVIDRMELRFLALLPWLILTAGFLKRSRAY 582
>11_01_0003 - 6099-7766,8193-9062
Length = 845
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/48 (20%), Positives = 23/48 (47%)
Frame = -1
Query: 382 IAKVFAASHACAFGLLKCITVPSSLIIFTSSMPGIVFTNNFLRMTAVF 239
IA+ + +G L C+ + + F + +P ++ T FL+ + +
Sbjct: 535 IARAHGTALGSVYGALACLVIDRMELRFLALLPWLILTAGFLKRSRAY 582
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,106
Number of Sequences: 37544
Number of extensions: 308973
Number of successful extensions: 769
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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