Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0162
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)                   66   2e-11
SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)                    30   0.98 
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)                      30   0.98 
SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)                     28   5.3  
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 27   6.9  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_51814| Best HMM Match : Rota_NS26 (HMM E-Value=5.6)                 27   9.2  

>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
          Length = 98

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +3

Query: 255 LKKLLVNTIPGIEEVNMIKEDGTVIHFNNPKAQ 353
           LKKL VN IPGIEEVNMIKEDGTVIHFNNPKA+
Sbjct: 49  LKKLSVNPIPGIEEVNMIKEDGTVIHFNNPKAE 81


>SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)
          Length = 335

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 149 FNFSLFIVLFLSVNCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 12
           +  S+ ++   + NC+    GH   T++  Y   +YE SM + R H
Sbjct: 32  YELSMDVIRTHATNCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 77



 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 149 FNFSLFIVLFLSVNCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 12
           +  S+ ++   + NC+    GH   T++  Y   +YE SM + R H
Sbjct: 67  YELSMDVIRTHATNCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 112



 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 149 FNFSLFIVLFLSVNCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 12
           +  S+ ++   + NC+    GH   T++  Y   +YE SM + R H
Sbjct: 196 YELSMDVIRTHATNCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 241



 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 149 FNFSLFIVLFLSVNCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 12
           +  S+ ++   + NC+    GH   T++  Y   +YE SM + R H
Sbjct: 231 YELSMDVIRTHATNCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 276



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 149 FNFSLFIVLFLSVNCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 12
           +  S+ ++   + NC+    GH   T++  Y    YE SM + R H
Sbjct: 161 YELSMDVIRTHATNCLWTLFGHTLRTVYGRYSDTHYELSMDVIRTH 206



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 116 SVNCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 12
           + NC+    GH   T++ +Y   +YE SM + R H
Sbjct: 137 ATNCLWTLFGHTLRTVYRHYSDTRYELSMDVIRTH 171



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 116 SVNCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 12
           + NC+    GH   T++  Y   +YE SM + R H
Sbjct: 8   ATNCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 42


>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
          Length = 554

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 149 FNFSLFIVLFLSVNCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 12
           +  S+ ++   + NC+    GH   T++  Y   +YE SM + R H
Sbjct: 45  YELSMDVIRTHTTNCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 90


>SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 176 PMRTCEWSFFNF--SLFIVLFLSVNCVN 99
           P+  CEW +FN+  S+  +LF    C+N
Sbjct: 284 PIAICEWKYFNYYTSIAALLFFIPLCIN 311


>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1488

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 199 CVSVCP-YRRCVLANGVSLIFRCSLCC 122
           C S+C  Y RCV+   V++   CS  C
Sbjct: 639 CTSICHRYGRCVMLANVTMFCNCSRAC 665


>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 244 VFCHLWPQ*-REQPSSCVSVCPY 179
           VF  +WP+  RE P+SC+S  P+
Sbjct: 734 VFAFIWPRFYREAPASCISELPW 756


>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 364 ASHACAFGLLKCITVPSSLIIFTSSMPGIVFTNNFLRMTAVF 239
           A+H   FG+   I V +SL+       G++F  ++ R+ A+F
Sbjct: 267 ANHMEKFGVKLPIVVHTSLVYCIQHFSGVIFQFSYYRICALF 308


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = -1

Query: 358  HACAF-GLLK-CITVPSSLIIFTSSMPG---IVFTNNFLRMTAV--FCHLWPQ*REQPSS 200
            H C F G  K C+ +  +L+      P    + F N+  R      F  +  + +E P +
Sbjct: 1674 HKCCFNGCQKDCVLMTDALVCPKPCGPNAECVEFMNSERRCLCKPGFVQVGMECKENPCN 1733

Query: 199  CVSVCPYRRCVLANGVSLIFRC--SLC 125
             +   PY +C + NGV+ + +C  S+C
Sbjct: 1734 LIDCGPYSKCYVNNGVA-VCKCPPSIC 1759


>SB_51814| Best HMM Match : Rota_NS26 (HMM E-Value=5.6)
          Length = 282

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 351 QAWLAANTFAITGHGENKQTTKMLPGILSQFGPDG-LNRLKR 473
           +A+ A N  A+T HG+     K+ PG++S F  D  L RL++
Sbjct: 199 KAFSADNEPAVTVHGDLSGYVKVDPGLVSYFKADSRLVRLRQ 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,119,197
Number of Sequences: 59808
Number of extensions: 366185
Number of successful extensions: 914
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)