Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0162
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...   116   1e-26
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z79755-3|CAB02108.1|  355|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine re...    27   8.0  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score =  116 bits (279), Expect = 1e-26
 Identities = 53/83 (63%), Positives = 65/83 (78%)
 Frame = +3

Query: 255 LKKLLVNTIPGIEEVNMIKEDGTVIHFNNPKAQAWLAANTFAITGHGENKQTTKMLPGIL 434
           LKKL V  IPGIEEVNMIK+DGTVIHFNNPK Q  + ANTF++TG  +NKQ T+MLPGIL
Sbjct: 50  LKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGIL 109

Query: 435 SQFGPDGLNRLKRIASSVAAPKP 503
           +Q GP+ L  LK++A++V    P
Sbjct: 110 NQLGPESLTHLKKLANNVTKLGP 132



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 30/41 (73%), Positives = 35/41 (85%), Gaps = 3/41 (7%)
 Frame = +1

Query: 136 SEKLKKLHSQ---VRIGGKGTPRRKKKVVHVTAATDDKKLQ 249
           +E++KKL +Q   VRIGGKGTPRRKKKV+H TAA DDKKLQ
Sbjct: 7   AERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQ 47


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
 Frame = -3

Query: 149 FNFSLFIVLFLSVNCVN--VKTG--HFFMTLFSYYKTRQY 42
           +  S+F +LF+++NCV+  ++ G  H ++T + Y+K R +
Sbjct: 102 YGASIFYILFVALNCVSSILQFGCFHVYITSYKYHKYRAF 141


>Z79755-3|CAB02108.1|  355|Caenorhabditis elegans Hypothetical
           protein F43G9.4 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 112 TLKNSTMNSEKLKKLHSQVRIGGKGTPRRKKKVV 213
           +L  +   SEK+KK++ +V     G P ++KK V
Sbjct: 107 SLGEAAGGSEKMKKMNGEVTKNKTGKPEKRKKKV 140


>AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine
           receptor, class h protein272 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 176 PMRTCEWSFFNFSLFIVLF-LSVN 108
           PMRT +WS FN  ++ VL  LS++
Sbjct: 41  PMRTVKWSMFNLHVWSVLLDLSIS 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,477,088
Number of Sequences: 27780
Number of extensions: 275050
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)