Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0162
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   3.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   5.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 446 SELAEDTREHLCGLLILPVSGNR 378
           +++   T+EH+CG+  +P S  R
Sbjct: 531 TDVIPGTQEHVCGVKGIPCSWGR 553


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 5   KTRAYDQVTWKTRTVASCNN 64
           KTR   + +W TR    CNN
Sbjct: 346 KTRIIGRRSWVTRESQICNN 365


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 240 FVICGRSNVNNLLLASRCA 184
           F I G +NVNNL+  +RCA
Sbjct: 401 FRILG-ANVNNLIKNTRCA 418


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 387 GHGENKQTTKMLP 425
           G+G NK+T  MLP
Sbjct: 58  GYGSNKKTRHMLP 70


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 240 FVICGRSNVNNLLLASRCA 184
           F I G +NVN+L+  SRCA
Sbjct: 398 FQILG-ANVNDLIRNSRCA 415


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 240 FVICGRSNVNNLLLASRCA 184
           F I G +NVN+L++ +RCA
Sbjct: 567 FRILG-ANVNDLIMNTRCA 584


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 188 VPLPPMRTCEWSFFNFSLFIVLFLSVNCVNVKTGHFFMTLFSYY 57
           VP   M  C   +FN  L    +L    + V     F+ ++SY+
Sbjct: 194 VPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFLIIYSYW 237


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 188 VPLPPMRTCEWSFFNFSLFIVLFLSVNCVNVKTGHFFMTLFSYY 57
           VP   M  C   +FN  L    +L    + V     F+ ++SY+
Sbjct: 70  VPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFLIIYSYW 113


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 185 PLPPMRTCEWSF 150
           P PP+R  EW+F
Sbjct: 377 PPPPIRGGEWTF 388


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 216 VNNLLLASRCAL 181
           VNN+L AS C+L
Sbjct: 279 VNNILAASACSL 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,804
Number of Sequences: 438
Number of extensions: 3372
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)