Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0162
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73230.1 68414.m08475 nascent polypeptide-associated complex ...    82   2e-16
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ...    81   4e-16
At2g43110.1 68415.m05352 expressed protein                             32   0.26 
At3g09922.1 68416.m01184 hypothetical protein no ATG start, anno...    30   0.80 
At1g54370.1 68414.m06199 sodium proton exchanger, putative (NHX5...    30   1.1  
At5g47690.1 68418.m05887 expressed protein                             29   1.4  
At2g04100.1 68415.m00393 MATE efflux family protein similar to r...    27   5.7  
At3g50830.1 68416.m05566 stress-responsive protein, putative sim...    27   7.5  
At3g42620.1 68416.m04424 hypothetical protein includes At2g06610...    27   7.5  
At3g10460.1 68416.m01254 self-incompatibility protein-related si...    27   7.5  
At2g30810.1 68415.m03757 gibberellin-regulated family protein si...    27   7.5  
At4g36630.2 68417.m05198 expressed protein                             27   9.9  

>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain
          Length = 165

 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 40/83 (48%), Positives = 56/83 (67%)
 Frame = +3

Query: 255 LKKLLVNTIPGIEEVNMIKEDGTVIHFNNPKAQAWLAANTFAITGHGENKQTTKMLPGIL 434
           LK++ VN+IP IEEVN+ K+D  VI F NPK QA +AANT+ ++G  + K+   +LP I+
Sbjct: 43  LKRVGVNSIPAIEEVNIFKDD-VVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQII 101

Query: 435 SQFGPDGLNRLKRIASSVAAPKP 503
           SQ GPD L+ LK++A       P
Sbjct: 102 SQLGPDNLDNLKKLAEQFQKQAP 124



 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 MNSEKLKKLHSQVRIGGKGTPRRKKKVVHVTAATDDKKLQ 249
           MN EKL K+ + VR GGKGT RRKKK VH T  TDDK+LQ
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQ 40


>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
           (NAC) domain-containing protein / BTF3b-like
           transcription factor, putative similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain; identical to cDNA
           BTF3b-like factor GI:5912423
          Length = 165

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 38/75 (50%), Positives = 55/75 (73%)
 Frame = +3

Query: 255 LKKLLVNTIPGIEEVNMIKEDGTVIHFNNPKAQAWLAANTFAITGHGENKQTTKMLPGIL 434
           LK++ VN+IP IEEVN+ K+D  VI F NPK QA +AANT+ ++G  + K+   +LP I+
Sbjct: 43  LKRIGVNSIPAIEEVNIFKDD-VVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQII 101

Query: 435 SQFGPDGLNRLKRIA 479
           SQ GPD ++ LK++A
Sbjct: 102 SQLGPDNMDNLKKLA 116



 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 MNSEKLKKLHSQVRIGGKGTPRRKKKVVHVTAATDDKKLQ 249
           MN EKL K+ + VR GGKGT RRKKK VH T  TDDK+LQ
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQ 40


>At2g43110.1 68415.m05352 expressed protein 
          Length = 288

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 21/54 (38%), Positives = 30/54 (55%)
 Frame = +1

Query: 64  LNSVIKKCPVLTLTQFTLKNSTMNSEKLKKLHSQVRIGGKGTPRRKKKVVHVTA 225
           L+S+ K+CP + L    LK      E++  L  +V IG  GTP R KK+V + A
Sbjct: 172 LHSLTKQCPAVKLFSKHLKVE----EQVSLLKKRVNIGS-GTPNRIKKLVDIEA 220


>At3g09922.1 68416.m01184 hypothetical protein no ATG start,
           annotated according to PMID:11123795;  IPS1 mRNA,
           complete sequence GI:8164007
          Length = 80

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 266 QLFEDDCSFLSSVAAVT*TTFFLRLGVPLPPMRTCEWSFFNFSLFIVLFLSVNCV 102
           Q  + DC F  S +    T+   +  VPL   R C ++F   SLF +L  S  C+
Sbjct: 3   QKADSDCEFCLSPSRNWATSILWQASVPLGISRLCIFNFVILSLFSMLCFSSLCL 57


>At1g54370.1 68414.m06199 sodium proton exchanger, putative (NHX5)
           contains similarity to Na+/H+ antiporter GI:1655701 from
           [Xenopus laevis]; Member of The Monovalent Cation:Proton
           Antiporter (CPA1) Family, PMID:11500563; contains
           non-consensus AT-AC splice sites at introns 3 and 10
          Length = 521

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 245 SFLSSVAAVT*TTFFLRLGVPLPPMRTCEWSFFNFSLFIVLFLSV-NCVNVKTGHFFMTL 69
           SF   ++++  T  F+ +G  +  M    WS   F LF +LF+ V   VNV    + + L
Sbjct: 310 SFFHLISSLAETFTFIYMGFDIA-MEQHSWSHVGFILFSILFIGVARAVNVFGCAYLVNL 368

Query: 68  F 66
           F
Sbjct: 369 F 369


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 467 QSVQAVGSELAEDTREHLCGLLILPVSGNREGVR-GQPRLCLRVVK 333
           Q++  V  E +ED +EHL  +L+  +  NR  VR    RL ++V++
Sbjct: 172 QNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIE 217


>At2g04100.1 68415.m00393 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 483

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 203 FLRLGVPLPPMRTCEWSFFNF 141
           F + G+P   M T EWS F F
Sbjct: 255 FFQYGIPSAAMTTIEWSLFEF 275


>At3g50830.1 68416.m05566 stress-responsive protein, putative
           similar to cold acclimation WCOR413-like protein gamma
           form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar
           to stress-regulated protein SAP1 [Xerophyta viscosa]
           gi|21360378|gb|AAM47505; identical to cDNA cold
           acclimation protein WCOR413-like protein beta form
           GI:10121842
          Length = 203

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 478 AILFSRFKPSG-PNWLRIPGSIFVVCLFSP 392
           A++   F P   P+WL +PGS+ ++ + SP
Sbjct: 107 AVVLRLFFPKHFPDWLEMPGSLILLLVVSP 136


>At3g42620.1 68416.m04424 hypothetical protein includes At2g06610,
           At5g28266, At3g42620, At4g07696, At2g06690, At2g16160,
           At2g05480, At2g12140, At1g45080, At2g16330
          Length = 148

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 330 HFNNPKAQAWLAANTFAITGHGENKQTT 413
           +F+  +   W+  NTF++  H E   TT
Sbjct: 21  YFDRIRENEWIVINTFSVRNHDEGIHTT 48


>At3g10460.1 68416.m01254 self-incompatibility protein-related
           similar to self-incompatibility [Papaver nudicaule]
           GI:3097262
          Length = 132

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
 Frame = -1

Query: 436 LRIPGSIFVVCLFSPCPVIAKVFAASHACAFGLL--KCITVPSSLIIFTSSMPG----IV 275
           LR+   + VVCL++   +   VF  ++      L  KC +  ++L  F    PG      
Sbjct: 3   LRVTIFLMVVCLYTENVIGGSVFIYNNLPHGHYLQVKCKSGDTNLG-FHVRRPGRFYNYA 61

Query: 274 FTNNFLRMTAVFCHLW 227
           FT++ L  T  +CHLW
Sbjct: 62  FTDHILGKTLYWCHLW 77


>At2g30810.1 68415.m03757 gibberellin-regulated family protein
           similar to GASA5 [Arabidopsis thaliana] GI:1289320;
           contains Pfam profile PF02704: Gibberellin regulated
           protein
          Length = 106

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 211 QPSSCVSVCPYRRCVLANGVSLIFRCSLCC 122
           +P  C   C YR    ++    +F C+ CC
Sbjct: 44  KPEECPKACEYRCSATSHRKPCLFFCNKCC 73


>At4g36630.2 68417.m05198 expressed protein
          Length = 950

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 339 NPKAQAWLAANTFAITGHGENKQTTKMLPGILSQFGPDGLNRLKRIAS 482
           NPK  A   A      G  E+  TTKM+  +LS     G  R K+I +
Sbjct: 739 NPKKSAKDFAKRIVALGSFESSDTTKMMDSVLSSKAKGG--RSKKIVA 784


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,254
Number of Sequences: 28952
Number of extensions: 241566
Number of successful extensions: 670
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)